HsaEX6009063 @ hg19
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94897862-94903298:+
Coord C1 exon
chr7:94897862-94898019
Coord A exon
chr7:94898519-94898819
Coord C2 exon
chr7:94903211-94903298
Length
301 bp
Sequences
Splice sites
3' ss Seq
ATAATCTCTTATACCAACAGCCA
3' ss Score
6.86
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGCACTGAAAACTCGAGCCCAGCTCTCTGTGAAGAACAGACGCCAGAGACCCTCTAGGACAAGACTGTATGATAGTGTTAGTTCCACAGATGGGGAGGACAGTCTAGAGAGAAAG
Seq A exon
CCATCAAACAGTTTCTATAACCACATGCATATTACCAAATTACTTCCACCTAAGGGTTTGAGAACGTCTTCTCCAGAATCAGATTCTGGTGTTCCACCCCTCACCCCGGTGGATAGCAATGTGCCCTTCTCGTCTGACCACATAGCTGAATTTCAAGAAGAACCACTGGACCCAGAAATGGGGCCTCTCTCCTCTATGTGGGGAGACACTTCACTGTTTTCTACTTCAAAGTCTGATCATGATGTGGAAGAATCTCCTTGCCATCACCAAACCACCAACAAGAAAATATTACGAGAAAAAG
Seq C2 exon
ATGATGCCAAAGATCCCAAATCACTAAGGGCATCCAGTTCATTGGCGGTGCAAGGAGGAAAAATTAAGCGGAAGTTTGTGGATCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'19-20,'19-19,20-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.990 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAATGAAGCAGTCCCAGA
R:
CCCAGATCCACAAACTTCCGC
Band lengths:
246-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)