BtaEX0028238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12351499-12377874:+
Coord C1 exon
chr4:12351499-12351656
Coord A exon
chr4:12352167-12352464
Coord C2 exon
chr4:12377755-12377874
Length
298 bp
Sequences
Splice sites
3' ss Seq
ATAATCTCTTATACCAACAGCCT
3' ss Score
6.77
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTTTAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGTACTGAAAACTCGGGCCCAGCTCTCCTTGAAGAACAGACGCCAGAGACCATCTAGGACAAGACTCTATGACAGTGTCAGCTCAACTGATGGGGAGGACAGTCTGGAGCGAAAG
Seq A exon
CCTTCAAACAGTTTCTGTAACCACATGCACATTACCAAATCACTTCTGCCCAAGGGTTTGAGAGCTTCTCCAGAATCAGATTCTGGTGCTTCATCCCTCAGTCCAGTGGCTGGCAGTGTGCCCCTCCCGTCTGACCACATAGCTGAATTTCAAGAAGGACCACTGTACTCGGAAGGGGAGCCTTCCTCCTCTGTTGGGGAAGACACTTCACTCTCCTCTCCTTCAAAATCTGATCATGATATGGAAGAATTGCCTTGCCACAATCAAGCCACCACCACGAAAATACTACAAGAAAAAG
Seq C2 exon
AATTTTACCTTCAATGACGATTTCAGTCCTAGCAGCACCAGTTCAGCAGACCTGAGCGGCCTGGGAGCAGAGCCCAAAACGCCCGGACTCTCTCAGTCCTTGGTGCTCTCATCCGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426_MULTIEX1-1/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=0.960 C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTAATGAAGCAGTCCCAGAGAC
R:
TCGTCGGATGAGAGCACCAAG
Band lengths:
277-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development