BtaALTA0023216-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12351499-12352464:+
Coord C1 exon
chr4:12351499-12351656
Coord A exon
chr4:12352221-12352267
Coord C2 exon
chr4:12352268-12352464
Length
47 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCAAATCACTTCTGCCCAAGGGT
3' ss Score
1.38
Exon sequences
Seq C1 exon
ACTTTAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGTACTGAAAACTCGGGCCCAGCTCTCCTTGAAGAACAGACGCCAGAGACCATCTAGGACAAGACTCTATGACAGTGTCAGCTCAACTGATGGGGAGGACAGTCTGGAGCGAAAG
Seq A exon
GGTTTGAGAGCTTCTCCAGAATCAGATTCTGGTGCTTCATCCCTCAG
Seq C2 exon
TCCAGTGGCTGGCAGTGTGCCCCTCCCGTCTGACCACATAGCTGAATTTCAAGAAGGACCACTGTACTCGGAAGGGGAGCCTTCCTCCTCTGTTGGGGAAGACACTTCACTCTCCTCTCCTTCAAAATCTGATCATGATATGGAAGAATTGCCTTGCCACAATCAAGCCACCACCACGAAAATACTACAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426-21-23,21-22,21-21-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGGGGAGGACAGTCTG
R:
TGTCTTCCCCAACAGAGGAGG
Band lengths:
134-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development