BtaALTA0023216-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12351499-12352464:+
Coord C1 exon
chr4:12351499-12351656
Coord A exon
chr4:12352167-12352267
Coord C2 exon
chr4:12352268-12352464
Length
101 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATAATCTCTTATACCAACAGCCT
3' ss Score
6.77
Exon sequences
Seq C1 exon
ACTTTAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGTACTGAAAACTCGGGCCCAGCTCTCCTTGAAGAACAGACGCCAGAGACCATCTAGGACAAGACTCTATGACAGTGTCAGCTCAACTGATGGGGAGGACAGTCTGGAGCGAAAG
Seq A exon
CCTTCAAACAGTTTCTGTAACCACATGCACATTACCAAATCACTTCTGCCCAAGGGTTTGAGAGCTTCTCCAGAATCAGATTCTGGTGCTTCATCCCTCAG
Seq C2 exon
TCCAGTGGCTGGCAGTGTGCCCCTCCCGTCTGACCACATAGCTGAATTTCAAGAAGGACCACTGTACTCGGAAGGGGAGCCTTCCTCCTCTGTTGGGGAAGACACTTCACTCTCCTCTCCTTCAAAATCTGATCATGATATGGAAGAATTGCCTTGCCACAATCAAGCCACCACCACGAAAATACTACAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426-21-23,21-22,21-21-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAGACCATCTAGGACA
R:
TTTCGTGGTGGTGGCTTGATT
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development