MmuALTA0013949-4/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5134017-5134932:+
Coord C1 exon
chr6:5134017-5134174
Coord A exon
chr6:5134639-5134791
Coord C2 exon
chr6:5134792-5134932
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATGACCTCTATACCAACAGCCC
3' ss Score
7.03
Exon sequences
Seq C1 exon
ACCTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCATTGAAAACCCGGGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACACGGCTCTATGACAGCGTCAGCTCAACTGATGGGGAGGACAGCCTGGAGAGGAAG
Seq A exon
CCCTCAGACACTATAACCACACATATGTTACCAAATCGCTTCTGCCCAAGGCTTGGAGAGTTTCTTCTCCAGAATCGGAGTGTGGTGTCACACTCCTCACCCCCGTGACGAGCCCTAGGGCCTTCTCATCCCACCACACGACTGAGTCTCCAG
Seq C2 exon
GAGGATCACAGCATCCAGAAGGGGACCCTTTCTCCTCTATCTCGGGAGACACTTCATCCTCCTCGACTTCAGCATCCGATCATGACACAGAAGACTCTCCTTGCTGCCACCAAGCCACTGAGAAAGCGTTACAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827-38-46,38-45,38-44,38-43,38-42,38-41-4/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.842
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCATTGAAAACCCGGGC
R:
AACGCTTTCTCAGTGGCTTGG
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types