GgaALTA1025132-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009686 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23959044-23960075:+
Coord C1 exon
chr2:23959044-23959201
Coord A exon
chr2:23959775-23959883
Coord C2 exon
chr2:23959884-23960075
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATAATCTCTTATGCCAACAGCCA
3' ss Score
6.24
Exon sequences
Seq C1 exon
ATTTCAACGAGGCAGTGCCAGAAACAGAGAGACTGGACTCAAAGGCTCTGAAAACCCGAGCTCAGCTTTCAGTGAAGAACAAGCGGCAGAGGCCAACTAGGACAAGGCTCTATGACAGCATCAGTTCAACTGATGGAGAGGACAGCCTTGAACGAAAG
Seq A exon
CCATCAAACAGTTACAGTAGTCCCATGCACATTTCAAAATCACCACTGCCCTTATGCATGAGAGCATCCTCACCAGCATCAGATTCTGGTGCTTCCTCCCTCTCCCCAG
Seq C2 exon
TGGCTAGCAGTGCAGCAATCTCCCTTGACAACCTAACTGAAAACCAAGAAGAAGGACAGCACCACAAAGGAGGTGTCCTTTCCCTGTGTGCTCGGGGAGACACTCCACTTTCCTCTCCTTCAAAATCTGGGCACAGCTCTGAAGCATCTCCTTTGCATCACCCAGCTGGCAGGAATGTTTTGCAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686-23-29,23-28,23-27-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAGAACAAGCGGCAGAG
R:
TGGGTGATGCAAAGGAGATGC
Band lengths:
252-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]