HsaEX6009063 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95268550-95273986:+
Coord C1 exon
chr7:95268550-95268707
Coord A exon
chr7:95269207-95269507
Coord C2 exon
chr7:95273899-95273986
Length
301 bp
Sequences
Splice sites
3' ss Seq
ATAATCTCTTATACCAACAGCCA
3' ss Score
6.86
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGCACTGAAAACTCGAGCCCAGCTCTCTGTGAAGAACAGACGCCAGAGACCCTCTAGGACAAGACTGTATGATAGTGTTAGTTCCACAGATGGGGAGGACAGTCTAGAGAGAAAG
Seq A exon
CCATCAAACAGTTTCTATAACCACATGCATATTACCAAATTACTTCCACCTAAGGGTTTGAGAACGTCTTCTCCAGAATCAGATTCTGGTGTTCCACCCCTCACCCCGGTGGATAGCAATGTGCCCTTCTCGTCTGACCACATAGCTGAATTTCAAGAAGAACCACTGGACCCAGAAATGGGGCCTCTCTCCTCTATGTGGGGAGACACTTCACTGTTTTCTACTTCAAAGTCTGATCATGATGTGGAAGAATCTCCTTGCCATCACCAAACCACCAACAAGAAAATATTACGAGAAAAAG
Seq C2 exon
ATGATGCCAAAGATCCCAAATCACTAAGGGCATCCAGTTCATTGGCGGTGCAAGGAGGAAAAATTAAGCGGAAGTTTGTGGATCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'39-54,'39-49,40-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=0.991 C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAATGAAGCAGTCCCAGA
R:
CCCAGATCCACAAACTTCCGC
Band lengths:
246-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains