HsaEX6009061 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95268550-95286325:+
Coord C1 exon
chr7:95268550-95268707
Coord A exon
chr7:95274085-95274168
Coord C2 exon
chr7:95286206-95286325
Length
84 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTACTATCATTACAGGGC
3' ss Score
8.28
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGCACTGAAAACTCGAGCCCAGCTCTCTGTGAAGAACAGACGCCAGAGACCCTCTAGGACAAGACTGTATGATAGTGTTAGTTCCACAGATGGGGAGGACAGTCTAGAGAGAAAG
Seq A exon
GGCGCCTTTGCGAAGGAATTCCAGCAAGGGAAAGAAGTGGAAAGAAAAAGAAAAAGAAGCCAGTAGGTTTTCTGCAGGTAGCAG
Seq C2 exon
AATTTTACCTTCAATGATGACTTCAGTCCCAGCAGTACCAGTTCAGCAGACCTCAGCGGCTTAGGAGCAGAACCTAAAACACCAGGGCTCTCTCAGTCCTTAGCACTGTCATCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528_MULTIEX2-4/10=C1-8
Average complexity
C3*
Mappability confidence:
83%=83=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=0.759 C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACTGAAAACTCGAGCCC
R:
GGTCTGCTGAACTGGTACTGC
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains