DreEX6074054 @ danRer10
Exon Skipping
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41559864-41562890:+
Coord C1 exon
chr19:41559864-41560011
Coord A exon
chr19:41562388-41562434
Coord C2 exon
chr19:41562803-41562890
Length
47 bp
Sequences
Splice sites
3' ss Seq
GGATGTGCTTTGTGTTACAGATC
3' ss Score
9.12
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
ATTGCTACTCTGGAGTCAGAGCTGATGCAACTGATGAAGCAAAATGGCATCCAAGTAAACAATAACAACAACAGTGCTGAGAGCAGAGCGCAGCTGACGGAGAGACTGATGGCCTTACAGTGTTCAAGGAGAAATGTAGCTGAAGGAG
Seq A exon
ATCTGTGTGAGCTGACAGGAGCCAGTGAAACAGAGAGAGACGAGAGG
Seq C2 exon
GGCTCCAAGTCTCAGTCCTCCAGAGCATCTGATGCCACAGAGGCCACAATCAGGCACCTGCAGCCTCATCCGGGACCTGATAATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304-'12-13,'12-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACGGAGAGACTGATGG
R:
TTATCAGGTCCCGGATGAGGC
Band lengths:
140-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]