RnoEX0068931 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30215870-30238097:+
Coord C1 exon
chr4:30215870-30216027
Coord A exon
chr4:30225054-30225131
Coord C2 exon
chr4:30237978-30238097
Length
78 bp
Sequences
Splice sites
3' ss Seq
ACTGTATGCTGTTGTTGTAGGGC
3' ss Score
7.16
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCGCTGAAAACTCGGGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACAAGGCTCTATGACAGCGTCAGCTCCACTGATGGGGAGGACAGCCTGGAGCGGAAG
Seq A exon
GGCACCTTTGCGAAGGAATCCCAGCAAGGGGAAGAAATGGAAAGAAAAAGAAGTCAGTAGGTTTTCTGCAGGTAGCAG
Seq C2 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGTTCAGCAGACCTGAGCGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX2-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=1.000 C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011756fB11216
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCTCTCTGTGAAGAAC
R:
GCGTTTTGGGTTCTGCTCCTA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]