RnoEX0068932 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30215870-30238097:+
Coord C1 exon
chr4:30215870-30216027
Coord A exon
chr4:30235848-30236046
Coord C2 exon
chr4:30237978-30238097
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTTCACCCCACAGAAT
3' ss Score
11.14
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCGCTGAAAACTCGGGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACAAGGCTCTATGACAGCGTCAGCTCCACTGATGGGGAGGACAGCCTGGAGCGGAAG
Seq A exon
AATCTTCAGAAGCAAGTTGGAGAACTGGAAAGCCAAACCAGCCTCTACAGTTCAGGCCTCCGCCCCCTCTCCTTGCATGCCTTTCTCATGGTTTAATGAAAGTCGGAAAGGATCCTATTCCTTCAGGAACCTGCCTTCAGCTCCAAATCCCCTCCCGCCTTCTCCTGAGACTCAAATTTCAGATAAAACAGGGTCCAAG
Seq C2 exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGTTCAGCAGACCTGAGCGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869_MULTIEX2-4/4=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.516 C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011756fB11217
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATTCGAAAGCGCTGAA
R:
ATCTGAGGACAGTGCCAAGGA
Band lengths:
244-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]