HsaEX0049635 @ hg19
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94903397-94915637:+
Coord C1 exon
chr7:94903397-94903480
Coord A exon
chr7:94913330-94913642
Coord C2 exon
chr7:94915518-94915637
Length
313 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTTTCACAAAACAGGAT
3' ss Score
6.63
5' ss Seq
AATGTAATA
5' ss Score
-1.48
Exon sequences
Seq C1 exon
GGCGCCTTTGCGAAGGAATTCCAGCAAGGGAAAGAAGTGGAAAGAAAAAGAAAAAGAAGCCAGTAGGTTTTCTGCAGGTAGCAG
Seq A exon
GATCTTCAGAGGCAGACTGGAAAACTGGACACCCAAGCCATGTTCAACAGCTCAGACCTCCACTCGTTCCCCTTGCATGCCTTTCTCATGGTTTAATGACAGCCGGAAAGGATCCTATTCCTTCAGGAACCTGCCTGCGCCTACAAGTTCCCTTCAGCCTTCTCCTGAGACTCTAATTTCAGATAAAAAGGGGTCCAAGGTAGAAAACACATGGATTACAAAAGCAAACAAGAGAAACCCAAATCCCTCCTCTTCTTCAATCTTTGGAAGGCATTCTCAACTTATGTCTGTAGTCTGGATCCAAGAAACCAAT
Seq C2 exon
AATTTTACCTTCAATGATGACTTCAGTCCCAGCAGTACCAGTTCAGCAGACCTCAGCGGCTTAGGAGCAGAACCTAAAACACCAGGGCTCTCTCAGTCCTTAGCACTGTCATCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'22-23,'22-22,24-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=0.528 C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCGAAGGAATTCCAGCA
R:
TCATCTGATGACAGTGCTAAGGAC
Band lengths:
198-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)