HsaALTD0005001-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94913330-94915637:+
Coord C1 exon
chr7:94913330-94913528
Coord A exon
NA
Coord C2 exon
chr7:94915518-94915637
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
AGCTTCATTTATTTTTACAGAAT
3' ss Score
7.45
Exon sequences
Seq C1 exon
GATCTTCAGAGGCAGACTGGAAAACTGGACACCCAAGCCATGTTCAACAGCTCAGACCTCCACTCGTTCCCCTTGCATGCCTTTCTCATGGTTTAATGACAGCCGGAAAGGATCCTATTCCTTCAGGAACCTGCCTGCGCCTACAAGTTCCCTTCAGCCTTCTCCTGAGACTCTAATTTCAGATAAAAAGGGGTCCAAG
Seq A exon
NA
Seq C2 exon
AATTTTACCTTCAATGATGACTTCAGTCCCAGCAGTACCAGTTCAGCAGACCTCAGCGGCTTAGGAGCAGAACCTAAAACACCAGGGCTCTCTCAGTCCTTAGCACTGTCATCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-23-23,24-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGCTCAGACCTCCACT
R:
ACTGAGAGAGCCCTGGTGTTT
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)