DreEX6074050 @ danRer10
Exon Skipping
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41563103-41567118:+
Coord C1 exon
chr19:41563103-41563154
Coord A exon
chr19:41564639-41564698
Coord C2 exon
chr19:41567070-41567118
Length
60 bp
Sequences
Splice sites
3' ss Seq
TAACAAGCTTATATTTTCAGATC
3' ss Score
5.13
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
ACTCTTCAGCAAGTCGAGATCACAAATCTGGCAACAAACGACTAGACTTGGG
Seq A exon
ATCTTCTCTGAGGAAAAGTAAAGGGACAGACCAGGACCCAAAAGGATCTCCCGGTAAAAG
Seq C2 exon
CTCCACAGGGCCTTCAGCAGAAAACAGCCCTGAAAGACGCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304-'17-18,'17-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCAGCAAGTCGAGATCAC
R:
CTTGCTCCTGCGTCTTTCAG
Band lengths:
101-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]