HsaEX1029171 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95274085-95284330:+
Coord C1 exon
chr7:95274085-95274168
Coord A exon
chr7:95283374-95283487
Coord C2 exon
chr7:95284018-95284330
Length
114 bp
Sequences
Splice sites
3' ss Seq
AAAATATCCACTTTTTACAGATG
3' ss Score
7.32
5' ss Seq
AAGGCACTA
5' ss Score
-0.23
Exon sequences
Seq C1 exon
GGCGCCTTTGCGAAGGAATTCCAGCAAGGGAAAGAAGTGGAAAGAAAAAGAAAAAGAAGCCAGTAGGTTTTCTGCAGGTAGCAG
Seq A exon
ATGGAGAACTAAAAGCCGAGAGAAGGCCTGAGACCATGTACTTAGGAGGTGGTAAACCCTGGCCCTCCAAGTGGGAGATGAGGACTTCAGATCTCCTACGCCTCCTGTGAAAAG
Seq C2 exon
GATCTTCAGAGGCAGACTGGAAAACTGGACACCCAAGCCATGTTCAACAGCTCAGACCTCCACTCGTTCCCCTTGCATGCCTTTCTCATGGTTTAATGACAGCCGGAAAGGATCCTATTCCTTCAGGAACCTGCCTGCGCCTACAAGTTCCCTTCAGCCTTCTCCTGAGACTCTAATTTCAGATAAAAAGGGGTCCAAGGTAGAAAACACATGGATTACAAAAGCAAACAAGAGAAACCCAAATCCCTCCTCTTCTTCAATCTTTGGAAGGCATTCTCAACTTATGTCTGTAGTCTGGATCCAAGAAACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528_MULTIEX2-6/10=4-7
Average complexity
C2*
Mappability confidence:
89%=89=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=1.000 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000289495fB23231
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAAGGAATTCCAGCAAGG
R:
CTCAGGAGAAGGCTGAAGGGA
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains