HsaALTA1038193-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95268550-95269507:+
Coord C1 exon
chr7:95268550-95268707
Coord A exon
chr7:95269261-95269351
Coord C2 exon
chr7:95269352-95269507
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCAAATTACTTCCACCTAAGGGT
3' ss Score
2.24
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGCACTGAAAACTCGAGCCCAGCTCTCTGTGAAGAACAGACGCCAGAGACCCTCTAGGACAAGACTGTATGATAGTGTTAGTTCCACAGATGGGGAGGACAGTCTAGAGAGAAAG
Seq A exon
GGTTTGAGAACGTCTTCTCCAGAATCAGATTCTGGTGTTCCACCCCTCACCCCGGTGGATAGCAATGTGCCCTTCTCGTCTGACCACATAG
Seq C2 exon
CTGAATTTCAAGAAGAACCACTGGACCCAGAAATGGGGCCTCTCTCCTCTATGTGGGGAGACACTTCACTGTTTTCTACTTCAAAGTCTGATCATGATGTGGAAGAATCTCCTTGCCATCACCAAACCACCAACAAGAAAATATTACGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-39-51,39-50,39-49-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=0.993
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCTCTCTGTGAAGAAC
R:
ACAGTGAAGTGTCTCCCCACA
Band lengths:
171-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains