BtaINT0116707 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12376818-12377874:+
Coord C1 exon
chr4:12376818-12376833
Coord A exon
chr4:12376834-12377754
Coord C2 exon
chr4:12377755-12377874
Length
921 bp
Sequences
Splice sites
5' ss Seq
CAGGAAAGG
5' ss Score
2.9
3' ss Seq
GAGCTTTTTTACTTTTTCAGAAT
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTGCTTAGAATTCCAG
Seq A exon
GAAAGGCAATGCTTCTAGAATTATTAGCAAAAGAAGGTTTGCCAACAGCAGACCACATTGGTCTCGAAACATTTTTCAGTCTTGGATCTGAGAAGTCTGAATGTTGTTTGAAAAATTCCAGCCTTATCTTGCATTGGAGAGACTCTCAAGAATTTGGTTTAAAATGTTTTCACAAATGCAACTATGTAGTCATTGTGAGTTTATTTGACTGTAGCAGCCACTGAACATTTTCATAAAGTTTTGGGGAAGTGTTCATAAAGTTCTGACACACCCGACCTCCTCCAACCCCAGGTGATTGTTTGGAACCATGTTTCTGGCCGTGCTCCGGCCTCGCTGGTATTCCACTGGTGCTGTGCGAGAGCTGTATTTCAGCGTGTAACTCCTAGTGTAATGGCAGATTGTGACCCCCCAGAACTCATCATCTTGAAGGTTACATCCAGGAGAGGATCTGCCACTTCTCACGGTGTTTATCACGGCCAGCGGCAAGCAGTCCTTCCTAGGGGGTGCTCAAGTTACCTTTCTAATTTGGATTGCCATCTGTTCCTAATAACTCAGGCTCACCACACCATCTTATATTTTTACTTACACTGTTACTCGTCACAATTAGGGCCAAAGGAGATAGGCTTATTAACATGACTCCTCTGAGCAGTTGTAGAGGATAATGAATGCTGTACCCTTGAAGAGAGATTGAAGACTCATTTCTCTAAAATGCCTGGCCTTTCATGTGATAGAGAAAGAGCCTAGAATTCTGTGTGCAGCACAAAAGGCTAGAGTTCTCAGCCACTGCCGGGTGAAGGCCACCCAACCAAATCTGCATCTCTTCTAAGAGGACTAAAAAGAACCTCTCTAAAGCTTGTAAGCAGGCTTCTCTCTGGCTCACTCACCATGCTCATTTAACACTGAGCTTTTTTACTTTTTCAG
Seq C2 exon
AATTTTACCTTCAATGACGATTTCAGTCCTAGCAGCACCAGTTCAGCAGACCTGAGCGGCCTGGGAGCAGAGCCCAAAACGCCCGGACTCTCTCAGTCCTTGGTGCTCTCATCCGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426:ENSBTAT00000020761:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]