DreINT0018518 @ danRer10
Intron Retention
Gene
ENSDARG00000101171 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
Coordinates
chr12:10650253-10654701:-
Coord C1 exon
chr12:10654544-10654701
Coord A exon
chr12:10650590-10654543
Coord C2 exon
chr12:10650253-10650589
Length
3954 bp
Sequences
Splice sites
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
3' ss Seq
TGTGTATATCTTTGGTTTAGAGC
3' ss Score
7.23
Exon sequences
Seq C1 exon
ATCTGACGGAGGCGGTTCCTGAGACCGAACGGCTTGACAGCAGCCTACAGAAAGCCAAAGCACAACTGTCAATCAAAACCAGGAGACATCGACCTTCCCGAACCCGCCTTAGGGACAGTGTGAGCTCCATAGATGGAGATGACGGCATTGACAGAATG
Seq A exon
GTGTGTAGATTTCATGTACCTGATTATATGTAATGAACTGTTCACCTACAAATCAAAACACTGCGATGCATTATGTCATCTACTCATTCTTATGTCATTCCAAAGCTGTTCCACACTGTTGTCCGGGCCATCATCATTCACAATTTTATTTTATTTTTTTGAGTTAGCACCATTTCTGTTGCTGTTAGATCGTGTGAGAATTGATAAGTAATAATTATGTAAATAAGCCATTTATAATACATTTTAAATACAATAATTTGTAAAAATGATTTTTAAAAAGTTCTATGTTTGCCTATTGTTTTTGTTGTTGTTTGCCTACTGTTGTTACAAAATACTTTTATAACAGGAATTATATACATGTAAAATATAACCTGTGGTTAAGGTCTACAGCCAGTTATAGCATATACAGTGCATCCGCAGAGAATTCATAGCGCTTCACTTTTTCCACATTTTTTATGTTACAGCCTTATTCCAAAATGGATTAAATTAATTTATTTCATCAACTTTCTACCCACAATACCCCATAATGACAATGTGAAAAAAAAAAAACATTTTTTTTTTAATTATTGCATATTAAAAAAAAAAAAAAACTGAAAAATCACATGTACATAAGTATTCAAAAGCGTTTGCAGTGAAGCTAAATTGAGCTCAGGTACATTTTGTTTCAAGTGATTCTTGAGATGTTTCAGCAGCTTAATTGGAGTTCACCTGTGGTAAATTAAGTTGATTTGGACATGATTTGAAAAGGCACACACCTGCCTATATAAGGTCCCAGGGTTGACAGTGCATGTCAAAGCACAAACCAAACATGAAGACAAAGGAATTGTCTGCAGACCTCCGATACAGGATTGTCCCAAGGCACAAGGCTGGGGAAGGTTACAGAAAAAATTTCTGCTGCTCTGAAAGTTCCAATGAGCACAGCGACCTCCATCATCCATGTGGAAGATGTTTGGAACCACCAGGACTCTTCCTAGAGCTGGCCAGCCATCTAAGCTAAGTGATCAGGAGAGAAGGGCCTTAGTTAGGGAGGTGATCAATAACTCAATGGTCGCTCTGTCTAGCTCCAGCCATCTTCTATGGAGAGAGGAGAACCTTACAGAAGGACAACCATCTGTGCAGCAGTCCACCAATCAGGCCTGTATGGTAGATTAGCCAGTGTTAACCACTCCTCGTCTGGAATTTGCAAAAAGGCATCTGAAGGATTCTCACACCATAAGAAACAAAATTCTCTGGTCTGATGAGACTAAAATTGAACTCTTTAGAGTGAATGCCAGGCGTTACTTTTGGAGAATTCAGGCACCGCTCATCACCAGGCTAACACCATCACTACAGTGAAGCATGGTGGTGGCAGCATCAAGCTGTGGGGATGTTTTTTCAGCAGCATGAAATGGAAGACTAGTCAGAATAGAGGGAAAGATGAATGAAGCAATGTACAGAGACATCCTGAATGAAAACCTTCTTCAGAGTAATCTTGATTTCAGACTGGGGTGACGGTTTATCTTCCAGCAGGACAATGACCGAAAGCACACTGCCAAAATATCAGTGGAGTGGCTTCACAACAACTCGATGAATATCCTTAAGTGAACCAGCCAGAGCCCAGACCTAAATCCTTTTGAATATCTCTGAAGAGATGTAAAAATGGCTGTACACCGTCGCTTCCCATCCAACCTGATAGAGTTTGAGAGGTACTGCAAAGAGGAATGGGCACAAATTCTCAATGACAGGTGAGCCAAGCTTGTGGCATCATATTCAAAAAGAGTTGAGGCTGTAGTTGCTGCCAAAGATGCATCAACAAAGTATTGAGCAAAGACTGTACATTTTTATATGAACGTGATTTTTCAGGGTTTTAATTTTAATAAATTTGAAACAATTTCAAAAAAATCTTTTTTCACATTGGCATTATGGGCAACTGTGTGTAGAATGTTGAGGAAATAAATGAAATTAATCCGTTTTTGAATAAGTCTGTAATGTAAAAATGTGGAAAAAAATGAAGTGATATGAATACTTTCCCGATGCACTGCATTGTATAATAACTATAAATTACATAGAAGTATATCTATAATAAATATATATAATTATAAAATGTATTTTAATGCTGTTTGCTCTTAAATTCCACACATTACTAATTGATATAAAATACTTTATGATTTGAATTATGGAAATAGTTTACATTTATTTAAATTTTCACAATATATGTAAATCTAAAATAAATCAAAACTAAATAGAAACTAAACTGTACTTTAAATAAGTTTTTTCTGTGAAAAACAAAAGGAGTATCAATGAATTAAAAACATCTGTGAAGATTCTTCAAAAAAATCCCCCTTCTGTGTTCTACAGATGCTAAACATTAGGGTATTTAAAGGGGACCTATTATCCCTATTATGTATGTATTTATACAAGATGTAAAGTAAGACTCTCATGTCCCTAGAGTGTGTATGTTAAGTTTTTAGCTCAAAATATGCCACAAATAATTTTGCATAACTCTTAGAAACTGCCCCTTTTAGTCTTTGTTCCAAATTCTGCTGTTTTGGTAACTGTCACTTTAGTTTCAAATGAGATTGTTCTTCCAGCCCTCTTTTCAAAGGAAGGTGGAGCTACAAATATCTATATACAGTGTTCAGTTGGGCACTCCAAAATGTAACATTTTTAATGCCTCTTAATTGCTGACATTATCTGTGGCAGGTACTGTGCGAAAACTGAAGGGCCCTGTCATACACCCAGCGCAATGAGGTACAAGATGTGCTATTTTTAGGCCCTAATTTTCACATTTCTAATGATCAAATCCATTTGCCCCACTTTGTGGATTCATGGGTGTGTCTGTCTATAAAGGTGGTGTGTTAAGACACACTGCTGGCACGTTGCAATAAAAACTGACTGCACCATTGACCAGTCCAGCGCAGCGCATGTTAGTTATGTGCATATGCATGTTCAAACACTTAACACAGGATGTACAGCAATACACAAATATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATACATACATATATATATATATATATATATGAACCTCCATGCCTTCATGTCGGGGAAGCTTTTTTTTCAGTTTATTCATGACAATTTGCATTTGTATCATGTTATTATTATAAGCAGTATTATTTATTATATTCACATTTATATTTGTTTTAATAAAAACATGTTTAGATTTGTCCACCTGTCAGGTTTTGGAGAAGTATGTATCACCATATGTGCCATAAGAATAGGATGTTTTTTGAATACATTTCTTTGATATTGTTAATTTATTCGTTTGATGGAAATGGGTCTGTCAAACTGTTTTCTTGCTAGTGAAGCATTCAGTTTTACTATTCAGTTTTTCCACATACAAAGTCCACCATGTAAATAGCAACTGACTCTTACAGGCAATAGGAGATAAGACTCTGATTGGTTTAATGCACGTTATTCTCAAAACACACCCATAACTCATTAAGAGAATAAGCACAACCCTATTAGACCATGTGCTGCGGCACAAACCATATTTTTCCATCCTTAAAATAGCAAAAGTGCAACTAAGAATTTGCACCTATTGTTAAAATAGAGCCCTAAAAGTGTTCTTCTGCTTTTCACTCAGGGCTGTCTACACTAATGAGGGAAGGGTCTTCATTTATGATCAGGACTCTCCCCTCTGATATCTTGCTCAAAGGGAGAATGTCAATCAAAAGGGTTTTAAATGTGATTATAAAAAAAATTGAATTATCGAAATTTTACCATTAGAGGCTGGCTATATTCCACATAAATGTGATTAAAAGGAATTTTTCCACAATAGGTCCCTTTTATTCTTTGTTTATGTTCCTTTAAATGCAAACTGACTCATGATATATATCTTTGTGTATATCTTTGGTTTAG
Seq C2 exon
AGCTATGGCTCTTCCCCGGTCCACCCATCTTTCCACTGTTCCTCCCCCTCCTCCGACCTGCTCCTGTCCTCCCCTTCCTCACGAAGAGACCGAGCTTTCACCTTTGACCCCTGCACTGTGGTTGGAGAACGGGAGGTGCAAGATGAAAAAAGGAGCTACAGACACCTCCTGAATACTTCCCAGGAGACCCTGCCTCTCAGCCCATTAAAATCCCCCTCCAGAGCCTGCGTCCATTCAGAGACATCATCCCCAGCTCATCTTTGCCAGACGGACCGCCTCAAGTCTCGTGAGGGAAGCCAACCTCTACTACACTATGGAGAATACTCACAGAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101171:ENSDART00000164038:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.885
Domain overlap (PFAM):
C1:
PF153271=Tankyrase_bdg_C=FE(91.2=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]