GgaINT0098067 @ galGal4
Intron Retention
Gene
ENSGALG00000009686 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr2:23959044-23960075:+
Coord C1 exon
chr2:23959044-23959201
Coord A exon
chr2:23959202-23959774
Coord C2 exon
chr2:23959775-23960075
Length
573 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATAATCTCTTATGCCAACAGCCA
3' ss Score
6.24
Exon sequences
Seq C1 exon
ATTTCAACGAGGCAGTGCCAGAAACAGAGAGACTGGACTCAAAGGCTCTGAAAACCCGAGCTCAGCTTTCAGTGAAGAACAAGCGGCAGAGGCCAACTAGGACAAGGCTCTATGACAGCATCAGTTCAACTGATGGAGAGGACAGCCTTGAACGAAAG
Seq A exon
GTGAGAAGGACTCTGCCCTCTCTCTCAGGTTTCCTATGGAATGCTAGGTTGCCCCTGTAAGTCTTTTCATCTTCTGTCTTCGTCCTTGCATTGTAGCACAGGCAGTATATATTCCTCTGTGGCCAGTGTGCTGTGACTGCACTTGAGAGAAGCCTAAGTCTCCTTTGAGTCAGCACACCTGCGTTTTTGGTTGGTTTTGGTTGGTTTTTTTACATTTTCTTTTAACAGGAATCCTGGGCTTTCTGAAATAAGTGTTGTCTATAACGTAGAGTGGGTTCTTCAATATGTGCAGGAGGTGAAAAGAACTTGAATCCTACTTTTCTTTATTTGTTAATTGTTAACACAATTGGTACAATATTTACTCATTGTTTTATCTGATTCTGACTTCTGCTTGAAAGCAAATATCAATAAACAACACTATGTGGCATTAGAAGGTAATTACATGAATCGCTAATGTGTTTCTTACAAATAAAAGAGTGAATAATGAATAAAAGAATTGCATGTTCAAAGTAAACCTTGCTCATATCAGTTACTAAATGGTATAACCTGCTTTATAATCTCTTATGCCAACAG
Seq C2 exon
CCATCAAACAGTTACAGTAGTCCCATGCACATTTCAAAATCACCACTGCCCTTATGCATGAGAGCATCCTCACCAGCATCAGATTCTGGTGCTTCCTCCCTCTCCCCAGTGGCTAGCAGTGCAGCAATCTCCCTTGACAACCTAACTGAAAACCAAGAAGAAGGACAGCACCACAAAGGAGGTGTCCTTTCCCTGTGTGCTCGGGGAGACACTCCACTTTCCTCTCCTTCAAAATCTGGGCACAGCTCTGAAGCATCTCCTTTGCATCACCCAGCTGGCAGGAATGTTTTGCAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686:ENSGALT00000015764:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGAAGAACAAGCGGCAGA
R:
CTTCAGAGCTGTGCCCAGATT
Band lengths:
342-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]