HsaINT0130729 @ hg19
Intron Retention
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94897862-94898819:+
Coord C1 exon
chr7:94897862-94898019
Coord A exon
chr7:94898020-94898518
Coord C2 exon
chr7:94898519-94898819
Length
499 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATAATCTCTTATACCAACAGCCA
3' ss Score
6.86
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGCACTGAAAACTCGAGCCCAGCTCTCTGTGAAGAACAGACGCCAGAGACCCTCTAGGACAAGACTGTATGATAGTGTTAGTTCCACAGATGGGGAGGACAGTCTAGAGAGAAAG
Seq A exon
GTGAGCACCCTTGACCGTTTCCTGATTTGTACTGTTGGAGTATATCATTGTTCCTACAGCTTATTGAAGATTATGATTTTTCTGCAAACAGAGTCTATGTCCTAGTTGGTAAGCAGCTAGAATAGTTCACGTCTTTGTCTCCTGAATTCTTTATATTGTTGTAATTCAAAATATTTTGTCTATTCATTCAGTGAACTAACCAAGAGCATTATCTGTATTGTCATATTTCATGATGGTGCTTTTGATATTCAGCTATTGGTTTTACTTAGTGGGAAATAATGAACGTACAAGTAATTGTTTCTGTAGGTCTTAGGTATATGTATTAGTGACGATGTTAATATGGTGAATTGGTATGAACCATGCATTCTCATCTGTAAATCAACAAAAACTGGTTTTCATGGGGATTCACTAATAAAAGGTTGGTCTTATTTCAAAGTAAGTATTGCATAGAACTGATACTCAGTGGCATAACCTTCCTTATAATCTCTTATACCAACAG
Seq C2 exon
CCATCAAACAGTTTCTATAACCACATGCATATTACCAAATTACTTCCACCTAAGGGTTTGAGAACGTCTTCTCCAGAATCAGATTCTGGTGTTCCACCCCTCACCCCGGTGGATAGCAATGTGCCCTTCTCGTCTGACCACATAGCTGAATTTCAAGAAGAACCACTGGACCCAGAAATGGGGCCTCTCTCCTCTATGTGGGGAGACACTTCACTGTTTTCTACTTCAAAGTCTGATCATGATGTGGAAGAATCTCCTTGCCATCACCAAACCACCAACAAGAAAATATTACGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-PPP1R9A:NM_001166160:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGCCAGAGACCCTCTAG
R:
TTGGTGGTTTGGTGATGGCAA
Band lengths:
357-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)