BtaINT0116702 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024426 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12351499-12352464:+
Coord C1 exon
chr4:12351499-12351656
Coord A exon
chr4:12351657-12352166
Coord C2 exon
chr4:12352167-12352464
Length
510 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATAATCTCTTATACCAACAGCCT
3' ss Score
6.77
Exon sequences
Seq C1 exon
ACTTTAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGTACTGAAAACTCGGGCCCAGCTCTCCTTGAAGAACAGACGCCAGAGACCATCTAGGACAAGACTCTATGACAGTGTCAGCTCAACTGATGGGGAGGACAGTCTGGAGCGAAAG
Seq A exon
GTGAGCACCCCTGACCGCTGTCTGACTTGCGGCTTTGGGCTGTATCCTTGTTCCTACAGCTTATTGAAAATAATGATTTTCCTGCAGCCAGATTCTGTATTCTAGTTGAAAATAGCTGGAATAGTTCACTTCTATGTCTCCTAAATTCTTATTCACCTCTATATATCGTTATAATTCAAATTCTTTCTGTACTCACTCAATGAACTAACAACCAAGAGAATATCCATATCTTCATATCTCCTGATGGTGTTTTTGATATTCAGCTGTTGATTTTTCCTCGTGGTAAATAATTAGTGCACAAGTCATTGTTTTGATTATGTCTTAGGTGTCTGTGTTAGCTACAGTGGTAATATGGTACATTGTTGTGACTATGCAGTCTCATCTGTAAACCGTCAAAAAGTGGTTTTCATAGGGATTTACTAAAAACAAGGTTGGTCTGATTTCAAAGTAAGTATCAAATGGACTGATGATCAGTGGCATAACCTCCTTTATAATCTCTTATACCAACAG
Seq C2 exon
CCTTCAAACAGTTTCTGTAACCACATGCACATTACCAAATCACTTCTGCCCAAGGGTTTGAGAGCTTCTCCAGAATCAGATTCTGGTGCTTCATCCCTCAGTCCAGTGGCTGGCAGTGTGCCCCTCCCGTCTGACCACATAGCTGAATTTCAAGAAGGACCACTGTACTCGGAAGGGGAGCCTTCCTCCTCTGTTGGGGAAGACACTTCACTCTCCTCTCCTTCAAAATCTGATCATGATATGGAAGAATTGCCTTGCCACAATCAAGCCACCACCACGAAAATACTACAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426:ENSBTAT00000020761:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAGACCATCTAGGACA
R:
TTTCGTGGTGGTGGCTTGATT
Band lengths:
357-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]