GgaINT1022740 @ galGal4
Intron Retention
Gene
ENSGALG00000004463 | PRSS56
Description
protease, serine, 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr9:15072571-15072917:+
Coord C1 exon
chr9:15072571-15072679
Coord A exon
chr9:15072680-15072757
Coord C2 exon
chr9:15072758-15072917
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
ACTCCCCTCACCTCCTTCAGTTC
3' ss Score
8.43
Exon sequences
Seq C1 exon
GAACCAGAACGAGTTGGCGTGGACGGTGGTGGTGGGCGACCACGAGCTGGGCAAGGCAGACCCCGGGGAGCGGGCAGTGCCCGTGCGGCGCATCGTGCCTCACCCCAAG
Seq A exon
GTTGGTGGAGGTGGGCACCCCCAGATCATTCCTACGTTCCCCATAACCCCTCACCTACACTCCCCTCACCTCCTTCAG
Seq C2 exon
TTCAACCCCAAGACGTTTCATGGGGATCTGGCGCTGCTGGAGCTGGCGGAGCCGCTGGCACCGTCGGGCACCGTGAGCCCCGTGTGCCTGCCCAGCGGTACCACCGAGCCCAGCCCCGGCACCCCCTGCCACATCGCGGGGTGGGGGTCCCTGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463:ENSGALT00000007102:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(15.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGGGCAAGGCAGAC
R:
GCTGGGCTCGGTGGTACC
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]