RnoINT0118822 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94280971-94281316:+
Coord C1 exon
chr9:94280971-94281070
Coord A exon
chr9:94281071-94281156
Coord C2 exon
chr9:94281157-94281316
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TACCGCCATCTGCTCTCTAGTTT
3' ss Score
6.13
Exon sequences
Seq C1 exon
TGCCTCGAATGAGCTTCTGTGGACTGTGATGCTAGCCGAGGGACCCCAGGGGGAGCAAGCAGAGGAAGTGCAGGTGAATCGTATCTTGCCCCACCCTAAG
Seq A exon
GTGAGAAGACACACCCTGTGTCCTCAGAGCTGGGAACAGCACCCCAAACCCTCTTCCTTGACTTTGTACCGCCATCTGCTCTCTAG
Seq C2 exon
TTTGACCCGCAGACTTTTCACAATGACCTAGCGTTGGTACAGCTGTGGACGCCTGTGAACTCAGAGGGGCCTGCGCGCCCCATTTGCCTACCCGAGGGTTCTCGGGAGCCTCCTGCCGGCACTCCCTGCACCATCGCAGGCTGGGGGGCTCTCTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCGAATGAGCTTCTGTG
R:
AGGCCCCTCTGAGTTCACAG
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]