GgaINT1023336 @ galGal4
Intron Retention
Gene
ENSGALG00000006348 | RAPGEF3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:HGNC Symbol;Acc:HGNC:16629]
Coordinates
chrLGE22C19W28_E50C23:435538-436109:+
Coord C1 exon
chrLGE22C19W28_E50C23:435538-435626
Coord A exon
chrLGE22C19W28_E50C23:435627-436030
Coord C2 exon
chrLGE22C19W28_E50C23:436031-436109
Length
404 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
GGCTGTCTGCTCTCTTCCAGACA
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTACCTGGTGATGGCCGGGACGCCAGAGAAGATCCTGGAGCACCTGCTGGAGTTCATGAGGCTCGATGCCACGCTCTACGACCCCGTGG
Seq A exon
GTAGGTGGGGGCTGCCCTTTCGTCTCCATCAAACCCCTCCTTTGGGCTGGGAGAACTGCAGAGCGTCTCCTCCCTCCTCTCCCACATCCCCACACCCCCCACACGGAGCTGCAGAACAGGGAGATTCAGGAGCCAGGAGGTGTCCCCAGCGGGTCAAAAACCAGAGCTGCAGAGCCGGCATCCAACCTCCTCCCTGCGCACAATTTCTTATGCTTTCCATTCCAAAAAGCCTTTCCCTTCATTCCGAAACAAATAATAGATTTATATCTGCATTCTTCTCAGCCTTTTAGAAGCCGAACGTTACCCGGTGGGAGCTGTGGGGTGGAAGACCCCATGGCAACCCCACAGGGATGTTCCCAGCCCGGTGCGGGCGCAGCACAGCGGGGCTGTCTGCTCTCTTCCAG
Seq C2 exon
ACACACTCCTAGGGGATTTCCTGCTGACCTACACTGTGTTCATGCCGACCTCGCAGCTCTGCAGGGCTCTGCTGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006348:ENSGALT00000010260:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(25.5=90.3)
A:
NA
C2:
PF0061815=RasGEF_N=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]