GgaINT1023498 @ galGal4
Intron Retention
Gene
ENSGALG00000006457 | RBMX
Description
heterogeneous nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001073196]
Coordinates
chr4:4398643-4399064:-
Coord C1 exon
chr4:4398938-4399064
Coord A exon
chr4:4398750-4398937
Coord C2 exon
chr4:4398643-4398749
Length
188 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGGTTTTATTTCCACTGCAGTCC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTCTCTTGTATCATCAAAATGGTTGAAGCAGATCGTCCCGGGAAACTGTTCATCGGAGGCCTGAACACAGAGACAAATGAGAAAGCCCTCGAGGCTGTATTTGGCAAATATGGACGCATTGTGGAAG
Seq A exon
GTAAAAACCAAAAAATACTCTTGCCATCCTAAGATTAGAAACAACAAAACAGCTATGATGACTCCTATAATGTTGATCTTACGACATGATCATGTTCTCTAAGAAGTTCTGAGCTTAAAGGTTAAATAAAGGTTGAGTTTTGTTGCTTAATTACAGCAGAGGGTAACATGGTTTTATTTCCACTGCAG
Seq C2 exon
TCCTCCTGATGAAAGATCGTGAAACCAACAAGTCAAGAGGATTTGCTTTTGTAACGTTTGAGAGTCCAGCAGATGCTAAAGATGCTGCCAGAGACATGAATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457:ENSGALT00000010428:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(38.0=73.0)
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATGGTTGAAGCAGATCGTCC
R:
TTCCATTCATGTCTCTGGCAGC
Band lengths:
218-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]