HsaINT0138699 @ hg38
Intron Retention
Gene
ENSG00000147274 | RBMX
Description
RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:HGNC:9910]
Coordinates
chrX:136879017-136879453:-
Coord C1 exon
chrX:136879319-136879453
Coord A exon
chrX:136879124-136879318
Coord C2 exon
chrX:136879017-136879123
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTGAAAACTACTTTTTAGTAC
3' ss Score
2.17
Exon sequences
Seq C1 exon
ACTCACCGGCCCAAAAAAAAAAAAACATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGAAGCAGTATTTGGCAAATATGGACGAATAGTGGAAG
Seq A exon
GTGAGTTGTCTGGCAGTACAGGCTGGGCTATTATAATTAAAATATAAGCTATGATGAATTTGATTGCATTGATCGTCTGACATGATAATGTATTTTTGTCCTCTAAGAAGTTCTGAGCTTTCTGTTTACACATTTACTTTGGTTATTTCATTTGACCTAGGGTAACACTTTATTTTTCTGAAAACTACTTTTTAG
Seq C2 exon
TACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147274:ENST00000320676:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.437
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(38.0=73.0)
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATGGTTGAAGCAGATCGC
R:
TTCCATTCATGTCTCTGGCTGC
Band lengths:
218-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development