GgaINT1024257 @ galGal4
Intron Retention
Gene
ENSGALG00000002626 | RXRA
Description
retinoid X receptor, alpha [Source:HGNC Symbol;Acc:HGNC:10477]
Coordinates
chr17:7334731-7341651:+
Coord C1 exon
chr17:7334731-7334910
Coord A exon
chr17:7334911-7341481
Coord C2 exon
chr17:7341482-7341651
Length
6571 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCTTTCTTCCCCTCCGCAGCTG
3' ss Score
12.26
Exon sequences
Seq C1 exon
GTAAACATTATGGGGTGTACAGCTGCGAGGGCTGCAAAGGCTTCTTCAAACGCACGGTGAGGAAGGACCTGACCTACACCTGCCGTGACAACAAGGACTGCTTGATCGACAAGCGCCAGCGCAACCGCTGCCAGTACTGCCGCTACCAGAAGTGTCTTGCCATGGGGATGAAGAGGGAAG
Seq A exon
GTAAGGCACTGAGCACCCTGGGGTGCTGTGTGTCCTGTGGGCACCTGGCCGTGTGCTTGGGGTGACACACGGGGCTGTCAGGCACATGGTGTGCCCCGTCTGCCTACAGCTGGGGTTGTGCTGACCCAGGAGCGTTCCCTGGCAGTGCTGGCTGGTTTTGTTTTTTTTTCTTATTGGGAAGAAAGAAGAAATTCAGTCTTGTAAAAAGATATCCCTTCCCCTTACTGGAATTTAAATGAAGGATCTAAAACTCCCTGGCAGAGCCTCTTTGAAGTGCTCTTTTTAAATGCTGACTGCATCTCTCTGAAACTGCTGGCAGAATGGGCTTTTAGCAGGCACGATGGGAAAGTGACCCTGCGGTGCTGCTCAGGTCTCCTCTGCCTTCTCCCCTTACACCCTCACTGGGGCAGGCAGAGTCCTTTCCCTGCTGGCATCTCTCTGGGAAGCCCTTGGGGTGCCCTCCCTGGTCCTGCAGAACTTTGGTGCTTGGAAACTTTGGAGCTTTCTGGTGCAAGCAGCTGTGGGTTGCGCCATGGAGGTGGCTGCACTGGGTGCAGCTGTGAGCAGAGACCTCATTTGAGTGTGGTTTGGGGGAGTGGGCTCTCCATCCCCTTGGTTTGTGAGCAGTCATATCCTGTGATCGGGTACTGCTCCGTGCCCACCACCAGCAGCAATTGCACGGGCAGCACCGCTGGAGTTACAGCTCTATTAATTAATCTCTAAACGGTGGTGGAATTCCCCGGGGAGTGTGCGTACAGTGCGAGGGCTCTATTAATTCATCTTGATTAACATTATCGCAGTGAATAGCAAATGAATTCATAACGATCAGCCAATTATTTAAAAGTGTGACAGATGGGAGCTTCTTAACTCTCCAAGCGTGCTCAGGCGGTGCTGGCACGGCACGGGGAGGGCTTTGCTGGTGCACAGGGTGTGATCCCCCATGCAGGCAGAGCTGGGCTCGGTGCCCTGCTCCCCAGGTAGCACTAAGCCTGGCAGTGCAGTGGCTGCTGGCAGTGCAGAGGTGTCCCACTGCTGTGGCACACACCTGGAGCTGGAGCTCTCCAATCTTTGGTTTTGAGCAGCACTTTAGTGCTGATGCGCCTGATTTGCCAGCAGATGGTCTCCGTCCCATTGCATCCATCCCACTGCTGCTGTCCTTCCCTGTTGCCAGCCCCGAGCCTTGGCCATAGTTGTCCCCACAGCACCTCTTCTGGGAGCAGCTCTGGGCTGCATCCTGCACAGTGGTTCCTTTTGCCCTCAGTGCTTGCTTAGAAGAAAGCTGGCTGTTATCCTCCGGTGTAAACTGTTACCTCTTTTAAGTAACAGAACTGGGGTAATGGGCCTCATTTCCTCACAAAATACCTTACTCTGGAGACCTAATTTATAGCCCCATAAATGCAGAGCAGGCTCCTGCTGAGAAGCATCTCTCCTGTAGCCCACATGTGTTTGTATGCCGTGGAAGGACAGCAAAACACTCTACGTTAAGTAGTGAAGAAGATGCTGTTCAGTGGTTCTCCAATGACTGCTCTACACCCTGGTGCTGGGAAGGGGCAGGACAGAGGGGGCTGTTTGGGTGGAGGCTTTAGCAGCCAGGTCTGGGGGTCCAGGCTTAATGCAGGGAAAGGATTCCTTCTGCAGCATGCATCTCTGGCTGCTCCCTGTGAAAAAACATTACAGCACATCCTGATGCTGTATGAGCCCTATGGGTTCTGGGGGTATTGAGGCTCTGATAAATAAGCAGCCAGGAGCGTTTTCCCACTGTGAATTACTGCCAGCTGTGTGAGCCTTTGATTTCTGTGCTGTCTCCCAGAGAATACAACAAAATTCAGGTTACCAGCAGGGACCTTGACTAATGCAAGGACTGTTGTTGTGGGGGTAGCACTCTGCATCCACAGGTGTGACTCTGGTTGGTCTGGCACTCATTAGGGTCTGAGGTGAGTCTTGGTTCACGAAACAGCTTTAGAGCTTCTCTGTGCCAGCAGCTTTCTATTTCAAGGGGAAAAAGTGGAAAGTGAGTTAGTTAGGTGCAGTGCCAGTAGGAGGGGTTGGCTGTGGGGTGCCCTGGGGTCCCTGTGTGGCTGCAGATTGCCGTACAGAGCCCCAGCCCTGCATTGCCACCAGCAGGAAATGCTATCCAGGAGCCCTTTCCCATACTCCCTCTGAGCCACCGTGGGGGCACAGCACAACCCACCCCATCCCTCTGCCTCCTCCTTGTCTCCAGGCAGCTTTGTTAATTGCAGGCCTCACTAATTGCACGTGTGATAGTACCTGGTGGGATGGGTGCTGGTGTGTGTCCACCAGGGAACCTTCAGCACACCTGGAGACAGAAATCTGCCCCCTGGCACTGCTCCCTGGGTGTCACACCATGGCCTGGCCCCATTCACAGCTTGCTTGCCATAGGACAGAACCATCCCTGTGCCCTGACATCCTCAGGGTGAACAGGAGCAGGAATATGGGGAGAAAGAGCAGGAATTGGGTCTCCATCTCCCTGCTCTGAGCAAATGCAGAGCCAGGCAAGTGGCCACAGCCCAGCGAAGGGGCAGAGTTCAAGAGCACAGTTATTTTTAGGAGTAATTTTGGAACGGAAAATGCTTTTCAGCTTAATGAGCTTGTTTCTTCTATCCTTTTAAAGAGCTGCTCTTTAAACCAGCTGGTTAAGTGATGCTGGGTTTGTTTGTTGTTTTGGAGAATGCTCCGAGGTTGAGGATAAGGGTTTGGTTTGTGCTCGTCTCTCATTGCTTTGGCAGTGCTGTGGTCAGGTTCTGAGAGTGGAGTGACCTCGAGAGTTCGGTCTTCCAAAGCCATTCCCTGCACGGATTGATTTCATGCAAGTGCTTCAGTCCACTTTTTAACACTCCATTTCCCTGACGTTACGTTCGTGGCGTCGCAGCAGAGTTTTGCCCATCTTAAGAAATAACCAAACGTGGGATTCAGTTGAAAGGTGGAAGAAAACAGCGCCGTTGATTTCCTGCATCACAGCCTTTGAGTTTGTTCGTGGTAATAAGAAGCTACGACATAGGGGGGGAAAAAGGAAGCACGGCTGCGTGAGGGCAAAGCAGAAGAAATGTGCTCAGGACTGGTTTCCTATGGCAGCACTTTGACTGCAAATGGTTACCTGAGGAATAAGCACTTCAAGATGCACAGCTAAGATGTAGCATCATAAAAAACAGGCAGCAGGGCCCAATAAATTCCACCACTGGTGAAATGGGAATCCCCAGTAAACCCTCCCTGAGCACCTGGTAAATAAACAGCCACGTGCCGTAGGCTATGACAAACCCATGCAGACAAACCCACCAGAGCCTCTGGGTCTCCAGAGGGCATCCCAAAGCGTGGTGGAGGGCAGTGTCATCTCCCAGTGCCACAGTGATGTCCACAGAGCCACCCCAATTGCAGTGGGTTGGAAGGGGCCATTGTCATAGAATCATAGAATGGCCTGGGTTGAAAAGGACCACAATGCTCATCAGTTCCAACCCCCTGCTGTGTGCAGGGCTGCCAACCAGCAGCCCAGGCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAGCCTCCTTGGGCAACCTGTTCAGTGCGTCACCACCTTCATGTGTCTCTTCTGTCCATCGTTGGCTGTGGCTTTCACTCTGCCCAGGGATGGGTTAAACAAGGTGCCTGCTCTGCAGAGCCCACGTGTGGCATCTGATCCCAGAGAAGATCCCATTGGGTCAGTGGTCAATGGGTCAAGTTCTGGGGAATTATTCTCCTTCAAGGGAAGAAACAGAGCCCAGCCGGTTAGTCCGCAATATTGTTCCTGGAAGGATGGATTTTTATCCTGGAAAGAAGTGCACATCTGTATCAACTCAGGGTAAGCAGTAATTACAAGGCACCGAGCCCTCACCGAGCGTGCAGACACGCCATGGCACTGCTGCTGGTGACACCTCAGCCGGCTGCTGCCTGGTGGCAATCCATGGCCATGCACACAGCCCGCCCTGCTCCCCATGCACAGATCTGAGCCCTTAGGAAACCATCGCTGACTCAGTGTCGGAAACACCAAGCTGATTTTTGTTTGCGTCTCCAACCAGGCTTTAAACACACAGCATGCATTTGAAATCTTTCTCCGGGCTCATTAGCCTGCAGATCACAGCGTTGGGTCTCTCTTGGCGAGGTGAGGGCTTGAAAAGGAAGTTTGTGGCAGAGGGTTGGATGCTGGGGTGTTCCCACGGCTGGAGAGCAGGAGCTGTGCAGAGCTGGGCATGAGGTTTGGATGCAGTGTTGGCAACCTGACATTCCTTGTCCTCCTAAAGCCTCAGCGATGCACTCGTGCTCTCCCAGCAGCTGCAAGTTCTTTCTTTGCTCTCAAACCCACTTCTGTAGCCGTGAGATGTTGCAGCAGCGGTGAAGGCGGCACATCCCATGTTGGTGTGCTTGCTGGCAGTGGATGGATCCTGCACTTTTGGCACACGAGCCCTCGGAGCTGGGCAGCTCAGTGCTGTCTGCAATCCACGGGATGAGGCATTTTGGTGCTTTCAGAGAAGCTGCCAAGAAGTGGTCTGAGCACATACACTGCTGTGCTTGTCCTGGGGAAGTGCAGATGGGCTTGGGATCACGGGATGCAAAGCGACAGCAAGCAGCCTTAGGCAAGAAGAAGCCAAATCAAGCGGAATAACACGAGCACATCTTCATCAGGTGCCATGGAAAACACAGGCTTCTGTCTTTGGCACGGCTGAGACATAGCTGGAGGAGGCGAGGCTCTGACTGCAATATCTTTTTTTCCTCCTCAAGTGGATTGCAAGTTTTAAGTCCTTCCCTTCTGTTGAAATCACACTAGGAAAAAAAGCCCTCTCAGCCATATGAGTCTCCTTGAAGAAAAAGAAAAGCATTGGCACAGCCGTCAGACGGGGTTGGGGCAGATGCTCTTCATCACAGGAGTGTTCCTGAGGCGTGGCGAGCAGAAATCCTGCTTCACCTCCTGCTCTTAGTGCTGAGCGAGTGCTGTGCTATGGCCACAGACGTCAGCGTGGCTGGGAATGGTCCTGAGACCTCCAGGTCCCTGAGCTGCATGCCCTGTTCTTGTCCATCTGCACAGCAGCACGTGTCAGATGGGAGCAGAAGCATTCTCCAGAGCTGAACGTGGTTGTTTCCTCTTAGATACATGTTGGTTGTGTCACCGGGGGGAATTTGGGTTGAGAAAAGAACGTATGGGAACGAGAGATTTAAGCAGGTTTGATGTTAGTCTGGGAAAGTACAGGGAGGAATCAGAACCAGACGAGGTCCAGATGGACAAAAGGCACTGCACAAACCTGAGTGTTAACAGCAGCAGCCTACCTGGCCCTGGGCAGCCAGGCAGAAAACACTCTGTGAACCTCAGGAGCCTCTGCAGCCTGTACGATTAAAAGCAGCTTGCAAAAATAACCTCTTGCTTTTTGCAGGAGAGCTTTCAGCCAGCAAACGAAACGTCCTGTTGGCATGCAGGGCTGCAGAGCTGGGCAGCAGGAGGGCACTGCAAACTGGGCTGGCGTTAATAGGAGCAGTGTCCATATAGGATAGCACGTCCTTTAATTTCCTGTTGTTAAGGAAGAAGTTTTATATTCTGGCTTGTATTTTTTTTTTTTTGCACTTGGGGTGGAGTTGGTTCAGCAGCCTGAAGGGTCTGATTGTGCTGCAGACAGCTCTGGTTTCACTGCTGCAACGCCTGTGCCCCTGCTGCTGCTCCTCACATCACACAGCCAGGTTCAGATTCAGCAAAGAGGGAAGTGTCCAGGTAATTGTTAATAAATAGCAGGCTTCGGCGTGGCTGAGCACCTCATTCAGCCCTGAACAAAGAGCTGGGGAGAGGTTCAGGCCGTGGTCTCTCATGGTGGCAGCTCCTGTTGCTCGAGCTGTTTCCTGTGGGAACGGTGGATTTAGGGCATGCAGCACTGTGATTGAGACAGAGATAGTTACCGGTGTAACTGTCTGCATGAAGCTGCTTTCCAGGTTTAGCGACAGCTTTGTGCCAGCTTCAAAAGGAGATGATTAATAATAATGCTATTAGCATCTAACGAGCGTTTTTTTTTTTTTTCATCTGTGTACTCTTCAGACATTGACTCATCAGCATGTGACATGCTTCTGGCTAGGTTGCTTCTCCTGCATGGGACCTGGGGCAGGTCTCTCCTGTCTGGTCAGAGCTGAGGGCTGGGTCCTGCTTTGCAAGCGGCGCGTGATGGCACAGCCCCCACTGCTGCTCCAGGGGCCTCCGTGGGAATCCAACACCAGCAGCTTCAGGAGACGGTCTGACTTTAGACTTAGCTGTGAAAGTGACCCATTTCTCTTTTCTTTAGGATTCCCCACTGCTGTCCCTTCACCTCCTCGTTTTCTCCCCCTGCAGCAGCGCCCATCCGTTCCTCGCACCCACTGAGCATGCTGCTGGCAAGCTCAGGTTGGAGAGCAAGGCAGCAGGTGTGTGTGTGCTCTGCAGCTCGTAGGGATGCTGAAGGTGTCCAAGGCTCCGTGCAGCTCCGGGGTCCCAGCTCACCCCTGGCGCCGCAGTCAGGAGCCCTGGGCTGATGCTGTCCCTTTCTTCCCCTCCGCAG
Seq C2 exon
CTGTGCAGGAGGAGAGGCAGCGGGGGAAGGACCGCAACGAGAACGAGGTGGAGTCCACAAGTAGCGCCAACGAGGACATGCCCGTGGAGAAGATCCTGGAAGCAGAACTCGCTGTGGAGCCAAAGACAGAGACGTACATTGAGGCAAACATGGGCCTGACGCCGAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002626:ENSGALT00000004139:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.561
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(82.9=95.1)
A:
NA
C2:
PF0010425=Hormone_recep=PU(3.7=12.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]