GgaINT1024408 @ galGal4
Intron Retention
Gene
ENSGALG00000027253 | SBK3
Description
SH3 domain binding kinase family, member 3 [Source:HGNC Symbol;Acc:HGNC:44121]
Coordinates
chrLGE64:686404-691500:-
Coord C1 exon
chrLGE64:691184-691500
Coord A exon
chrLGE64:686600-691183
Coord C2 exon
chrLGE64:686404-686599
Length
4584 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
ATGCTATGGGGCCATTGCAGCAT
3' ss Score
2.7
Exon sequences
Seq C1 exon
AGCCCTTCAGGCTGCGGCTGGCTGACGGGCCCAGGCGCTGTGCGGGGCGGCTGGAGGTGCAGCGAGCCGGGCGCTGGGGCACGGTGTGTGATGACGGATGGAGCAGGGCCAACATGGCTGTGGTATGCCAGGAGCTGGGCTGCGGCGAGGCGCAGGACCTGGATGGGGAGCGGCCACGTTTTGGGCCTGGTGTCGGGCACATCTGGCTGGATGACGTCCGATGCCAAGGGCAGGAGAAGAGCCTGCAGGACTGCGCACACCGTGTGTGGGGATACCATGACTGCACCCACCACGAGGACATTGGAGTTGTATGCCAG
Seq A exon
GTGTGGGGCTGCCACCATGGCTTGCTGATGGCCACGGGACCCTGTGGAGCAGGGTTCAGCCATGCTCAGTCTTCTCTCCTTACAGGATCCCTGAGCATCACGGCTCTGGCCCCAGTAGTGTCAGGAACTGCTTTTAGCCCTCCTGCAGCATCTGCGTGAAGAACCCAAACAGGACCCCGAGCCCAAACAGGACTGCAACTGAAACAAATCCTGAGTCCAAACAGGATCCAAAACCAATCAGAACTCTGAGCCTGAATGGAACTCCTTGCACAAACAGGACCCAGAATGCAAACAGGACTCCCAAAACCCAACAGGATCCAAAATCAAAAAGGACCCAGAGCCCAAACGAGACCCCACATCCAGACAAGACCCAGAGCCCAAGCAGAACCCCAACCCAAGCAGAATCCAGAGCCCAAACAGGATCCCCTGCCCAAACATGATGCTGAGTCCAAACAGAACCCAAAACCAAACAGGTCTCCAAGTGTAATCAGAACTCAAAATATAAACAGGACCCCTCAAACTCAAGACCCAAAACAGAGCAGGTCCTAAAGCCCAAACAAGATCCTACATCCAGACAGGACCCAGAGCCCAAAAAGAATCCTGAGCCCAAACAGGACCGAAAACCAAACAGGATCCCCAAACCCAGACAGGACCCAAAATCAAAAAGGACCAAGAGCCCAAACAAGACTCCACATCCAGACAGGATCCAGAGCCCAAACAGAGCCCCAACCCAAACAGAATCCTGAGCACAATCAGGACTCCCTGTCCAAACAGAACTCCAAGCCCAAAGAGGACCTAGAATGCAAACAGGACCCCTCAAGTTCAGGCAGGGTCAGAAATCAAAAAGGATCCAGGTCCTCAGCCCTATCCGCTGCCCCCCACCCCAGCCCTATTCCTTTAATGGTGTCATTAAAAGCAAGCAGCATCCACGAGCACAGAACCTGGCCAGGGCTGTGGGGATTAGGACTGTGGGGTGACACTGGGATAGAGTGCCACACTGGGTGGTGGGGTCTTGGCAGGCCCAGGTGTGCTGTTGAAGTCCCCCTGTCCTGTCCTCCCTCCCTCCCCGTGGCCTCTTGACCCCATTATGAAACTACTAGTTAGTGCTAATCCTACCAGCCACCTGTCTGCTGCTGGTATCTGCTGCCAGGGCATGGGGTTGGCACCCAGCCAGCAGCTCTGGGATGTGGGGCTGGGGTCAGCCCCTGCTGGGAGGGCAGCCAGAGGGGAAATGGGGAGTGAGTGGGTAGATATGGGGCAATGGGGGACCAGGTGGGTTATGGGGTGCAGGAAGCCATCAATCTGTGGAAGGGTAAGGAGTGGGGAAATAGGGAGCTGTGGGAAGGGAAAGGGAGTGAGGCAATGGAGGCTGGGAGGGCACAGAATTGGGCAATGGGGGCAGGGTTTGCAGATGTCACAGAGTGGAGCAGTGGGCTGCAGTGCAGCAGCTCGGCAATGGGGGCTTTTGGGTTTATGGAAAGGGGGAGTGGAGTTTGTCCCCAGCAGAAAGGGATGTGGGGGTCAAGCTCAGGGTCACTGGGATGGCCCCAACCACTGAGACTTGGCACGGGGCCAGGCCCTGGCTGCATCCCCAATGCTGAGCTCTGCCACCTGGCCCCGGCTATTTCTGTGCCCCAGCAGCTGTCGGTGCCCCCGCCCCCAGCCACCCCCGCAGGGCTGGGTGCCATGGGGTTGGCACTGGGCCTTGTCTGTGCTTTGGGCCCTGTTGATGCTTTTCAGTGGGGCAGGAGGGTGATGGAGCAATCAGCCCCACACCCGCTGCCCCATAGCAAGGGGACACCCCCACCAGCAGCATCTGCTCCCTGTAATGGGATTGGAGAGGACAGGGTGAGGGGTGCAGCTGAGTGACCTTTTCACGTGCCAGCAAGGCGTGCTAATGTGCTGTCAGGTGTTAATTATGTGTCAGGGGTTAATTATGGCCCAGACAGCTGGGGTCAGGGCAGGCAGGAGCAGCTGGGATAGGGGAGAGAGCAGGTGGGGAGGGAGAGGGAACAGCCACGGGAAGAGAGGGAAGGATAGGGCTGTGGGAAATGGGTAGAGGGAGGGATGTGGTCTTGGGAAAAAGAGAGAGGGTGTGGGAAAAGGGGAGAGGGTGGCAAAAAGTTGTAGGAAGAGAGGGGAGAAGGAAGGATACGATCATGGGAACTGGGGAGGAATATGGCTATGGGAAAAAGAAGAGGGAGAGATGGCACTGTGGGAAATGGGGAAGAGGGAGGGATAAGGATGTGGGGAAAGGGGGAGAGGGTGTGGGGAAAGGGGGAAAGGGTGTGGGAGAAGGGGAAAGAGAGGGGTATGGTTATGGGAAATGGGGAGAGGAGGAATGAGACCGTGGGAACTGGGGAGAGGGAAGGATAAGGATGTGAGGAATCATAGAATGGCACAGAACGGACTGTAAAGCCCATCTAGTTCCACCTCGCGTGCCATGGAAAGGGAGAGGGAGGGATGTGGGCATGGGAAAGGATGAAGGATGAAGGGGTGGGAGAGAGACGTGGATATGGGAAAGAGGAAGGATGTAGGAAAAGAGAAGAGGGGGAGAGATATGGGTGTGGGACCTGGGGAGGAGGGATATGCACATGGGATAAGGAGAGAAAAAGAGATGGGGCTGTGGAAAATGGGAGAGAGAGGGGTTGTGGAAAGTGGGGAGAGGGAGGCATAAGGATGTGGGGAAAAGGGAGGGAAAGAGATGGGGCTGTGGGAAATAGGGAAAAGGGGAGGATATGGGTGTGGGAAAAGGGAGGTGAAGAGATGTGGACATGGGAAAAGGGGAAAAGGAATATGGATATGGATAATGGGGAGAAGGAAGCAGAGGGATGTGGGTAAAGAGGGAGAGGAAGGTATATGAGTGTTGGAAAAGGGAGATATAGGGATGTGGGAGAACAGGGAGAGGGAGGAGTATGGATGTAAGAAAAAGGGGAAAATTGGGGCTGTGGGAAATGAGAGATGGGGGATATGGAAGATGGGGAGAGGGAGGCATAGGGATATGGGTCATGAGGAATAGGAAGGAATATGATGAGAAAAGGTAGAGGAAGGGATATGGATGTGGAAAAGAGGGGAAAAGGAGGTATAAGGATATGGGAAAGTGGGGAGAGAAGGATATGGATGTGGGAAGTGAGGAGAAGGAAGGATGTGGGGATGGGAAAAGGGAGAGAGAGAGAGAGAGACACATAAGGATGTGTAAATTTGGGGAGAGGGATATGGTCGTGGCAACTGGAAAGAGGGAGGGATTTGGTTATGGGAAATGGGGAGATGAAAGGAGGAAAGCCTGGGAATTCAAGGGGAAGGAGATGTGGATGTTGGAAAAGGGGGAGAGGGAGAGATGGGCACTGAAGCAGAGGGTCAGCCCCACACCTTTGGGTGCGGCCCCACACCTTTCTGTGGAGCAGGAGCAAGTTTGGTTTTGGGGCACCAGGCAGCCCACGCTGGGAACAGAATAAGGGGGGATACCCATCTGCAGCCTCTGTGCTCCCCCTGCCCTGTGCCTGACTAAATCACTAAAACTTATAGAACAGCGATCAGTATTAATAAATGTAATCCAATTTATATTAATTAATAAATTATTAAAATTATTAAATTAATAAATGCAGTCTAATCTTTAACCTTTATTACACTGGGACATACGACCTCCTTATCTATGGACTTAGGAGAAGCTAAATGTTCACTCCATGCTGTTTCATGCTCTGTGCTGTCTGTCTGTCCCCAGGCAGTGCCTTGTCTTTGTATCCCGTGCTGCATGCTGTCTGTCTGTCCCCAGGCAGTGCCCTCTCTTTGCACCTCATGTTGTTTCTCTGTCCCCATGCAATGCTCTATCTCTTTTTGCATCCTGTCTGTCTGTCCGCACACCGTGCCCTGTCTGTCCTGCCCCTGCCTATCTTTGGCTCTCGGCACGCCTTGTGCCTTGCACATGTTCCCAATCCATTGGGACAGATTAACACGGCCCAGCGCTGCCCTGGGTCCGGCAGTGTTGGAGTGCGCAGGAAAATGTGAGTCACGGCCGCGGGCGCCACGGGGCCGGTGGCACAAAGCTGTGCTGCGGGGACACTTCAGGGATTCAGGTGAGGCTGCTTGCTTGTCCCTGTGCAACCCCGACCTGTGTTTTGCTTGTGGCTTCCTTACAGCCCCACAGCAGGGCTATGGGGAGCACAGCGTTCTTGTTGCTGTCCCATATATCTGGTAGTGGCAGTGGGTCAAAGATCCTGCTGCACAGCTGGGGATGGAGGAACGTGGAAGCGACAGAGCTGATCCACTGCCATGCGGTGATATGGGGTGAGATGTGGGGCTGATGTGGGGCAGTGTCCCAACTCTGCTTGTTCCCCCTTGGGATGCTCCCTACATCTGCTCAGGGATGGGGCTGGGCTGGGCTGGGATGCACTAGATTGAGCTGGACTGGGGTGAATTGGACTGAAGTGGGATGAACCGGACAACATTGGGCTGAATGGGCTCAACTGGGCTGGACTGGGCTGTTTCAGACAAGATTGGTCTGAGCTGTACTAGGCTGGGTCAAACTGGTGTGCACTGGGCAGTACCATCTGGGTGCTCCCTCTGCATGCTATGGGGCCATTGCAG
Seq C2 exon
CATGGTGCTGGGCTCTGCAGGGCCATGGCAGAGCCGGAGGAGGATGAGGAGGACAACGCGGCAGCTTTGGAGCAGCTGATGGCGCAGGCAGGCCGGGCACTGCAGTGGCAGGAGCTGGAGGAGCAGTTCTGCGTGCTGGCCGAGCTGGGCAGTGGCACCTATGGCCATGTGGTGCTCACTGAGCCTCGGGATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027253:ENSGALT00000045707:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.276
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(8.6=39.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]