GgaINT1024590 @ galGal4
Intron Retention
Gene
ENSGALG00000011945 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr27:3895249-3895710:+
Coord C1 exon
chr27:3895249-3895464
Coord A exon
chr27:3895465-3895544
Coord C2 exon
chr27:3895545-3895710
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GGATCCGCTTTGCCCAGCAGGAC
3' ss Score
4.92
Exon sequences
Seq C1 exon
AGGGCAGCCGCAACATCTCCAACCAGCTCAGCATCGGGACGGACATCACAGCTGAGCACCCAGGGCTGCGGCAGCGAGCCCAGAGCCAGGGCTGGTGGAGCGGGGTCGGCCAGTTCAGCTTTGCTGAGGTTTTCTCCCTGGCACAGCAGCCGCCACGCATGGAGGCTGCCAAGAGCCGCTATCGTGCTGGCAAGGAGCTGCTGCAGCAGCACGCAG
Seq A exon
GTGGGGACGGGGATGGGGACAGCCACCCCCATTTTGCTCCGTGGCAGCCAGCGGTGACGTGGATCCGCTTTGCCCAGCAG
Seq C2 exon
GACGCATCACAGCAGAGACGTTCATGGCCATCCTGCGGGATAAGGACAGCGGCATCTGCGTGGACTCGGAGGGTTTCCGCACAGCAGGCAGCATGGTGTCCGTGCTGCCCCAGGACCCTGCCTTGCCCTGCGTCCACTTCTTCACGGCCACCCCGGACCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011945:ENSGALT00000019483:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(33.5=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(9.8=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGGCCAGTTCAGCTTTG
R:
CAGATGCCGCTGTCCTTATCC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]