RnoINT0131863 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84969826-84970302:+
Coord C1 exon
chr10:84969826-84970041
Coord A exon
chr10:84970042-84970136
Coord C2 exon
chr10:84970137-84970302
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
GCCCTCTCCACCCTTGGTAGGGA
3' ss Score
5.97
Exon sequences
Seq C1 exon
GAGGTGCCCGAAATATTTCCAACCAACTGAGCATTGGAACAGACATCTCAGCAGAACACCCAGAGCTCCGCAGCCATGCCAAGGCTCAGGGTTGGTGGTCTGGGCAGGGCGTCTTTGACTTTGCGGAGGTCTTCTCCCTGACCCAGCAGCCTGTGCGCATGGAGGCTGCCAAGGCCCGCTTCCGGGCAGGGTGTGAGATGCTGCAGCGACAACAAG
Seq A exon
GTCTGTGAGTGGTGGGCACGAGGCCACGGTACCCCAGCTGGAGTCTCTCACAGCCCTGGTTGCTAAACCCTCTCTGCCCTCTCCACCCTTGGTAG
Seq C2 exon
GGAGCATCACAGCAGAGGTGATGATGGACATCCTCAGGAACAAGGAGAGCGGCATCTGCATGGACTCTGGAGGCTTCCGTACCACAGCCAGTATGGTGTCAGTCCTGCCCCAGGATCCCACAAAGCCTTGTGTTCACTTCCTCACTGCCACACCAGACCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(38.1=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(6.9=23.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTTGACTTTGCGGAGGT
R:
CTCCAGAGTCCATGCAGATGC
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]