GgaINT0049539 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18107928-18110774:-
Coord C1 exon
chr7:18110562-18110774
Coord A exon
chr7:18108097-18110561
Coord C2 exon
chr7:18107928-18108096
Length
2465 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
AAATGATTGTTTTGTATCTGAAA
3' ss Score
-3.4
Exon sequences
Seq C1 exon
GTGGTGTGCGGAATATTTCCAACCAGCTCTCTATCACTACCAAGATTGACAGAGAACATCCGGAGATGAGGGAATATGCCAAAAGCAAGGGCTGGTGGGATGGGGAAAAGGAATTTGATTTTGCTGCCACGTATTCTTATGTAAATACTGCCAGAATGACTACATCCAGGAGCCGCTACTGTGAAGGCTACAAACTTCTGAACAAACATAAAG
Seq A exon
GTATCTTTTTTGGATTGTTTAAGACTGTACGGCGAGCTACATTAGTCTAAATCATAAATGAGTAAACCTCTGATGTGGGCAAACTTTCATATGATCTGATGAACCAGGACTTCTTAGAAACATGTTTTTCCTAAAGGAGAAACACTGAACTTTGGAGACTTTTGTCCTTTTTTGCCACTTTGATGACGAGGAAGAAAATAAACCAAGCACCCCATATCAAATGCCCAACTACAGTAACAACACTGAGACCCTTCTGCTAAAGAGTTTGTAAGACCTCACTCTGAATGGTTCTGGTATGCTGTATACTACTCCTGTACCTGTAACTAAAAGCAGAGGCTGAAACAGACTCCCAAGGGTTGGCAGCCATAAAGAACCCTATGAACGTCTTTAATCTGACCCCATTCACCAGCACAGTGTTCACATACATAATGTTGTGTTCATTTTTGAGATTGTTTTTTAAATCTTAGTGATTTCACTGTAACTGCTACTCTTACCTTCTGCAGCCTAATGAAACACAGAGCAGAATAAAAGAATTTTCTGTACTCTAAGCAGGTGCTCTTAATCACCAACTTATTTATTTTCAGACCTCTCTAGAGAGAAGCTATTACTTCAAACTGCATCCACCTGGCAGCTTTTTGATACATCTGCCTTCACTCGCTCATTTGAAGTAATTAATTTGAACTCCAGTAACCCTGCACCCCAGTGGTTTTTACTTATTTGGCTGAGCTCTGTCAGACCAAGTTCAGCACTTAGTTCATGCATCACAATCAATTACTTTTTGCTTTCCTGCTTTAGCGATCATGTAAATCCTGCATTCATTTTGGGAATTGCAGGTTCTGAATACTGAAAACATTTTCATAATACCTGTATTTACCTGTATGATAACAATGCTGGGATTCTATCAGTGTTTTCATTCTAAATCCCCATTTTCAGGCATTACCTGAGCCATTTTAACAATCACACTAGGTGTTCGGGTTATCAGCTTCACATGGTTTCAGTTCTGTTTAGATTTATTTTAAATAGGTGTCCTAACTAGAAGCTATTTGGTTTAAAGCAGCAGTAAAATCACTGGTTTCTTAATCCATCCTGCCCAGCTTTTTCCTTCCATGGCATTACATCGTTTTTCTTTCCCCTGCTTCCTACCACATGAAGACCATTTTTAGATAAACGTTATTCACATTTCAAATAAGGAATGTATTTTAGGTATGTAAAGTAATTGTTAAAAAAAAAAAAAGTTCTAGTGGAAAATAGACAACACCTTTTCTGCTCGAGAGGTTGCCATCTTGCAGCTCACAAGCCGACTGCTGCTTGGTTTCTTGGATTTGTCTGGCTTGCTGATTTTTATCTCCAACTTGCCCAGGCTACTGTGGGGATACTAGGAAGAGATTATTTTCTTGTAGGCCTGGCTACAGACAATTTGTACTGCATGTATATATATATCTATATTTAAAGGCACATCTGACTTAGCAGTAGTGTATTTTAAGAGCAAACAGCAAGACAGTTTAAAAATATATCTTAATGAAGCCAGAATTTCACTAAGGCAACCACAGGGAGACTAAATGTAGATGGGCCTTCTCAGCAGAAAAAACACAGTGAATTAATTAGTCTTATTCTGTTCTAAGCATATGCTCAACCGGAACAACAGATGTGGAAAAAAGTATTTCAAGTGCTGCCTGTTGGAATATTGGATTGCTTAGGGCTACCGTGCCAGGGTTTTGGCTTCAGTGTATGGTATATAGGAACAGCAACAGCACGTGAAGACTAGATGGTGAGCATCTAGTCTTCTCACCCCATTGAGAAGAAAGAACTATTATCATAAAGACATTTGGTACTATACCTGTCATAGGCAGTTAGCACTTCTGGAAAAATGGATTTGCTATTGTAGTTTCTGTTGATTCTGTGCATAAAATCAGCTACTGAAGTTCATCATTCCGATCGTCAACTTGAAGCTTTCGTGCTTTGGAAGGTCAGCACAAAAAAAGTCTCAGGGCTTCGTTTCAAAGGCATACAAAGTCCATGCACAGTTACTTCTTACATTTCAAAGCAGCCTAATGGCATTATCTGCGTGCAGATCACAATGACCAATATGATTGTTTGTGTTCTCGACTCCAGCCCAATACTTAGAAAGTTCAGCCTTTCATCCAAGCTACTAATTTTCACGTGAAAAGTTACTGTGTGGATGACCATTTGCAAGCCCCGTGCACCTCACCTTTGTAGGAAAGGCCCTCCTTCCCTCCTCCTTTTTGAAGCCATAAATGTTATAGCTCTTTGAAATAAACACTTGGGAGAAAAACAGCGATATTTTGAAGTGTTATGTATTGAAGTATGGTTTGGCTTTTTTATTTTTGCCAATACAGACAAAGTAAGGTTGCCGCTGCCTACTAAAGTTAAAAGCAGGCAGTTGCAGAAAACGTACCAGTTGGCAGCATAAATAGCACTGTGTGTAAATGATTGTTTTGTATCTG
Seq C2 exon
AAATAGGTGCTATCACTGCTGAAACAATGATGGAAATTCTTCGTGACAAAGAGAGTGGCATTAATATGGAAGGTGGCTTTATGACAACTGGAAGCATGGTGTCCGTGTTGCCTCAGGACCCTAACCTGCCATGCATTCACTTCTTTACGGGAACTCCAGACCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270:ENSGALT00000023082:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=FE(24.7=100)
A:
NA
C2:
PF0357710=Peptidase_C69=PD(13.9=70.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]