GgaINT1024699 @ galGal4
Intron Retention
Gene
ENSGALG00000002643 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr8:3694661-3695087:+
Coord C1 exon
chr8:3694661-3694768
Coord A exon
chr8:3694769-3694904
Coord C2 exon
chr8:3694905-3695087
Length
136 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGTGGCCACATCTCTCGCAGCCG
3' ss Score
7.61
Exon sequences
Seq C1 exon
CCTCCTGCCAGCCCCTGCTCTGTGGTCTGCACGGTGACTGTGTGGAGGTCATCCAGAGCTACAAGTGTGAGTGCCACCCCGGCTTCGAAGGGGACAACTGTGAGAACG
Seq A exon
GTGAGTACCCAGCAGGCTCTGCTTGGGGCTGAGGTGCTTGTCATGGATGGGGCTTGGGGCTGCGTATCCCAAAAAGACCCAGCAGAGCGCACGGGTCCGTCGTGCTGCTGACAGGCTGTGGCCACATCTCTCGCAG
Seq C2 exon
CCGTGCAGTGCCCCATACTCGAGCCTAGAGGAGCGTCCATGAACTGCAGCCATCCCTTTGGAGACTTCAGATACAACTCCACCTGCACCTTCCGGTGCCCGGAGGGGTTTGAACGGCGAGGTGCGGACGAGCTGCAGTGCTTGGATGATCGGCAGTGGTCAGCGGAGACCCCCACGTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=83.8)
A:
NA
C2:
PF0008415=Sushi=WD(100=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCACGGTGACTGTGTG
R:
GACCACTGCCGATCATCCAAG
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]