RnoINT0132785 @ rn6
Intron Retention
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82442688-82443656:+
Coord C1 exon
chr13:82442688-82442795
Coord A exon
chr13:82442796-82443470
Coord C2 exon
chr13:82443471-82443656
Length
675 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CACCATTTTGTTCCTTACAGTCC
3' ss Score
8.99
Exon sequences
Seq C1 exon
CCTCCTGCCAGGACATGTCTTGCAACAGCCAAGGGGAGTGCATCGAGACCATTGGGAGCTACACCTGCTCCTGCTACCCGGGCTTCTATGGGCCAGAGTGTGAATACG
Seq A exon
GTGAGGCTGAAACCTGGGCGGTGTTATTTCAGAGTAAGGCTGCTCTCACGTGAGAGACGATGCCAGAAAGTAAATTATGATGGAGTCTCTCTAGCAAGTAAAGATAAGAGCCCCAATGCTGACTGCCCGTTCATACGATCGTCTCCAAACATTTGGGATAAAATCACTTTATTCTTGAAGAGAACATTCACTCATGATATTTCAGGGAGTAAACAAGAAATAGAAAGACAGGAAGCCTTAGGGCTGGAGAGATGGCTCAGCAGCTAAGAGCACTGGCTGCTCTTCCAGAGGACCCAGGTTCAATTCCCAGCATCCACATGGCAGGCAGCTCACATCTGCCTGTAACTCCAGTTCCAGAAGACCCGACACCTTCACCTGGACACACATGCGGGCAAAACACCAGTGCACATAAAATAAAAATAAACATTGAAAAATGCTAAATGAAAGCCTTAAAGTTAGTTTTACATAGTCAAATAAAAAATGTTGAGTGAATTGAGCCATCAAAAAAAAGTGACTATTTTCTAAGATGCTAGCAGTACAAAGGAACTAGACTAGGATGGAGGGCTGGGGCTAGCAGCCTAAGAAGAGAAGGTAAGGAGAGTTACAGCTCACTGTAAATATAGCGGAGTGGGGCTACAATAAGAAAAGAAAATATCACCATTTTGTTCCTTACAG
Seq C2 exon
TCCAAGAGTGTGGAAAATTCGACATCCCGCAACACGTTCTCATGAACTGCAGCCACCCTCTGGGGGACTTCTCCTTCAGCTCACAGTGCACCTTCAGCTGTCCTGAGGGCTATGACCTGAACGGACCCAGTGAGATGCAATGTTTGGCCTCTGGAATCTGGACAAATAATCCCCCGCAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794:ENSRNOT00000003759:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=81.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTGCCAGGACATGTCTT
R:
CTTTACACTGCGGGGGATTAT
Band lengths:
294-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]