GgaINT1024721 @ galGal4
Intron Retention
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3122353-3123761:-
Coord C1 exon
chr12:3123699-3123761
Coord A exon
chr12:3122473-3123698
Coord C2 exon
chr12:3122353-3122472
Length
1226 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CCTTCCCTTCCTGTCCCCAGACC
3' ss Score
12.01
Exon sequences
Seq C1 exon
ATCTACTGGCCGCCACTGCCTGGACAGACGGAGGAGTGTTTTCGGAAGGGGAAGGACCCAGCA
Seq A exon
GTGAGTCTCTGCAGCTGACGACAGCTAGGATGTGGGACCATGGGACTGCTGCAGGCATGGGGGAAACTGAGGCAGGGAGCTGGTGATGGAGCACCGGGCTCTGCAAATCCCATCTATGGGACCAGGGCAGCTTGAATGTGGATGCACCAATAACGCAGGAGCAGATGGGGTGGGGAACCTGAGCTCAGAGAGCCAAAATCCACGGGCTGGGAGCTGCCCTGCAGCCCTGCGTGGCAGAGCATCCATGTATGGAGCTGTGCGTGGTCTCAGCAGGGTGCTGATGGAGGGGTGTGAGCTGCTGTGCTGCGGGGTGAATTGGCCATCCCCACTACCCCCCTGTGTGGGAAACGTGCAGCCTGATCTGGCTTAGTGACCCCGTTCCCCTCTCTGCAATTACTTTGCATCCTCCCTGCCCTGACCTGAAACTGGAGGACGGCGGGGGGGTGGCCATAGCCACCAGGCTCCCCCACCCCACACAAACCCCTCCCGGCAATGCCCGTCCTTCTCAGTGTGTTTATTTTCCAAGCTCCGACAGATCCAAGCTGGGACAGCCTTGGTTTTTCCTACATGTATTTTTTTAACTTGCTATTTCGGAGGCTCTTTGCGAAGGGAAAATAAACAGCGGGGAGGCTGGGGGCAGCTCAGCAGCAGGTTCCCAGCAGACACGGGGCCTCACGATGATGGAGCAGGGTGGGCAGCGCTGGGAGAGGCTGAGCGCAAGGAGACTGTGCCTGAGAATGGTGGGGATGGAGCGAGCCTCCCCTGCACGTCGGTCAGTCCCATAGCCTGTCCCGTAACACGGGCAGGTTTGGGAGAGGATGGGGTGTGCACCCGGCTGGAGGGCACAAGGGATATGGCTGTGGTGCAGGGGATGATTTCCCTATTGCTGGGGAGGGGGATGATGTCCCCAGGGATGTCATCCCTACTGGTCCCCAGGGAAGGGGACTGTCCCCACTGGTAGGGCCTGGAGGCAGCCAAGGGGCTGTCAGAGGCGCTCTGTGTCCGGAGGCAGCCAAAGGCCGCCATGGGTCTCCGTCTCCCACATTTCCTCCCTTTGTTTCCTCCCCTTCACTCAGTACAAGCAGGGACAAAATGAGGGAAGGAGCAGCCAAAAGCCCATTCCTTTTGCAATGCGCTGGGGTTCTTAGCTGGTGGAGCCCACCCGAAGCAGCCCTAGCCCTGCCATATGGTCCCCACCAGCCTCCCCCTTCCCTTCCTGTCCCCAG
Seq C2 exon
ACCGACTGTGCCAACTACGTCCGCCTGCTGCAGCCCTACAACAGAACACACCTGCTGGCCTGCGGGACGGGTGCCTGCCACCCCGTCTGCACCTTCATCTACGTGGGGCACCGCGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476:ENSGALT00000007127:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
NA
C2:
PF0140314=Sema=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]