HsaINT0147310 @ hg38
Intron Retention
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52442185-52442621:-
Coord C1 exon
chr3:52442559-52442621
Coord A exon
chr3:52442305-52442558
Coord C2 exon
chr3:52442185-52442304
Length
254 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CCCCCTCCTTCTCCCCGCAGACA
3' ss Score
15.08
Exon sequences
Seq C1 exon
GTCCTGTGGCCACCGCAGCCAGGACAGAGGGAGGAGTGTGTTCGAAAGGGAAGAGATCCTTTG
Seq A exon
GTGAGTGCTGTCGGGAGGGATGGTCCCCCGACCTGACACCCTGCCCTGACCCCCAGGACAATCCGTGACCACGCCCCAGGTACCTCTACCAGGGGCATTTGGAGCAGATCTTGAGGGCTTTTGAAGGTCTGCTGGGAATGTCACACCCACCCCCCTCCCCAGAGCTGACCGCCAGACAGGGCTGAGCCTTGGGCCCCAAGGAGATGGTGGGCACCCCCTCTCACCCCTCAACCACCCCCTCCTTCTCCCCGCAG
Seq C2 exon
ACAGAGTGCGCCAACTTCGTGCGGGTGCTACAGCCTCACAACCGGACCCACCTGCTAGCCTGTGGCACTGGGGCCTTCCAGCCCACCTGTGCCCTCATCACAGTTGGCCACCGTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319:ENST00000231721:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=NA C2=0.117
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(18.0=100)
A:
NA
C2:
PF0140314=Sema=FE(35.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCAGCCAGGACAGAG
R:
GGTGGCCAACTGTGATGAGG
Band lengths:
164-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development