GgaINT1024745 @ galGal4
Intron Retention
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22629197-22629647:-
Coord C1 exon
chr6:22629503-22629647
Coord A exon
chr6:22629420-22629502
Coord C2 exon
chr6:22629197-22629419
Length
83 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CGTGTCCTCCCCCTGGGCAGTGC
3' ss Score
8.22
Exon sequences
Seq C1 exon
GAGGACGATGGAGGCCTCGGCCGTGTGCCGCTACGACATCTCTGAGGTGCAGCGTGCCTTCGAGGGGCCCTACATGGAGTACCAGGACTCCTCCCGCAAGTGGTCCCGCTACGATGGAGCAGTGCCCGAACCGCGGCCCGGCTCC
Seq A exon
GTGAGTGCTGGGGATGTGCGGGTTTGGAGAGGGGGCGCGGGTGGGTGAGCCCCCCCTGACAGCCGTGTCCTCCCCCTGGGCAG
Seq C2 exon
TGCATCACGGACAGCTCTCGCCGCAAGGGCTACAACTCGTCACAGGATCTGCCCAACAGTGTGCTGGACTTTGTCAAGCTGCACCCGCTGATGTTCGAGGAGGTGCAGCCGGCGGGCGGTGAGCCACTGCTGGTGAAGAGGAGCGTGGCATACAGCCGCCTGGCAGTGGACCGAGTGCAGGCCCTCGACGGGCGCTCCTACGACGTGCTCTTCATGGGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957:ENSGALT00000044069:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.1=100)
A:
NA
C2:
PF0140314=Sema=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTACGACATCTCTGAGGT
R:
GGCAGATCCTGTGACGAGTTG
Band lengths:
171-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]