RnoINT0132997 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264747491-264747975:+
Coord C1 exon
chr1:264747491-264747635
Coord A exon
chr1:264747636-264747752
Coord C2 exon
chr1:264747753-264747975
Length
117 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TCACCAATCCCCCCACCCAGTGC
3' ss Score
5.66
Exon sequences
Seq C1 exon
GAAGACTCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTACGAGGGTGGAGTCCCTGAACCCAGGCCTGGCTCG
Seq A exon
GTGAGCATCCAGGCCTGGACCCTGTGATGAATAGACAAAGCTGGGAGTGGGGTTCGGCCTTGTAAGAGGGAGGCAGGTGGTGGAGTCCTGAGTCTCATCACCAATCCCCCCACCCAG
Seq C2 exon
TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCTCAAGACTTGCCATCCCTCGTTCTGGACTTTGTGAAGTTGCACCCACTGATGGCTCGGCCTGTGGTACCCACACGTGGGCGGCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCATACCTGCTGGACCCACCTATGACCTGCTCTTTCTAGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.1=100)
A:
NA
C2:
PF0140314=Sema=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTCCCTGAACCCAG
R:
AAGAGCAGGTCATAGGTGGGT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]