GgaINT1024762 @ galGal4
Intron Retention
Gene
ENSGALG00000001171 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr28:2501204-2501753:-
Coord C1 exon
chr28:2501691-2501753
Coord A exon
chr28:2501306-2501690
Coord C2 exon
chr28:2501204-2501305
Length
385 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GCCCCCTCTTACCGGCACAGGCA
3' ss Score
6.98
Exon sequences
Seq C1 exon
AAGCTGACTTGGAGGTCGAACCAGCACGACATCAGCATCTGCCGGATGAAGGGGAAACACGAG
Seq A exon
GTATGGGGGGGGTCCATACCCTGTGAGCCCCCCTCACCCTCCTGCATCCCACGTCTCGTGTCACCGTCCCCCAGTGTCACCCTGTGCCTCTCGGCTCCCTGCCAACGCTTGTGTCAACTGTGATTTATTGGACGCTGGTATAATTGGGTTTGTAATTAATTATTTCTGGCCCGTTGATCAGAACAGACACATCTCATAATCTGCAAGAAATCCAATTTCCAGGTCCCATTCGTGCCCCCTGGGGCTGCCCCCCACCCCCACCTCCCCCAGCTCAGCCTCTCGTGGTGAGGGGGGCAGAGGGGACCCCCGCTTTCCCTGGGGCTGTTTTTGGGGCTGGTGCTGGGGAGCTGACACAGAGGCTGACGGCCCCCTCTTACCGGCACAG
Seq C2 exon
GCAGAGTGCCGAAACTTCATCAAGGTGATGCTGGTGCGGAACCAGAACCTGCTCTTCGTGTGTGGCACCAACGCCTTCAACCCCATCTGTGCCAACTACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171:ENSGALT00000001774:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(32.3=100)
A:
NA
C2:
PF0140314=Sema=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]