RnoINT0133066 @ rn6
Intron Retention
Gene
ENSRNOG00000045998 | Sema6b
Description
semaphorin 6B [Source:RGD Symbol;Acc:69278]
Coordinates
chr9:10943105-10943592:+
Coord C1 exon
chr9:10943105-10943167
Coord A exon
chr9:10943168-10943490
Coord C2 exon
chr9:10943491-10943592
Length
323 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTCCTTCTTCCCCACCCCAGGGT
3' ss Score
9.44
Exon sequences
Seq C1 exon
AAGCTTACCTGGCGCTCCAACCCCAGTGACATCGATGTGTGTCGGATGAAGGGCAAGCAAGAG
Seq A exon
GTAAGAGGAACCTGTCCTTGTCCAGGCTTATCCCCATCCTACCCTCCCTGGCCATGTTTCTAGTTGGGCCTCAAACTTCCCTGCAGCCTCGGAGTGATTCTTCCTCTCAGAGCTGTTACTGTTATGTTCAAGGACAGGTGCCTCGATTGCCACACCCAATCTACTCAGGTCACGCCCAATCTACTCAGGTCACGCCCAATCTCCTTCATCCCTTGGGAATAGCCCCGTCTCTTGGGTCAGCCTTGATTGAGCTCCCAGTCCGAGCCCTGTGCACAGGGACCAGGCAACACCCTCTGCAACTCCTTCCTTCTTCCCCACCCCAG
Seq C2 exon
GGTGAGTGTCGGAACTTTGTCAAGGTGCTCCTGCTTCGTGACGAATCCACGCTCTTCGTGTGCGGCTCCAATGCATTCAATCCCATCTGTGCCAATTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045998:ENSRNOT00000070794:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.7=100)
A:
NA
C2:
PF0140314=Sema=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]