GgaINT1025684 @ galGal4
Intron Retention
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:288376-288753:-
Coord C1 exon
chr2:288570-288753
Coord A exon
chr2:288491-288569
Coord C2 exon
chr2:288376-288490
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGCTGACCCTGTGCCCGCAGCGT
3' ss Score
8.69
Exon sequences
Seq C1 exon
CCACCCGAGCGACGAGAAGGAGTTCTCGTTCCCACGGAACATCTCAGCCGGCAGCCTGGGCTCGCTGCTGGTGCACCACCACAGCACCAACCACGTGGGTGAGGGCGGGGAGCCGGCCGTCACTGAGCCCCTCATTGCCGGGCACGGCGCTGAGCACGACGCGCGCGTGGATGTGGAGCGGGAG
Seq A exon
GTGAGCGGCCCTCCCTCCTCCCCCCTCCTTCCCCCCACTGCCACTCCTCATCCTGGCAGTGCTGACCCTGTGCCCGCAG
Seq C2 exon
CGTGAGGTCCCGACCCCTGCGCCCCCCGCCGGCATCACCCGCTCCAAGTCCAAGCATGAGCTGAAGCTGCTGGAGAAGATCCCTGACAACGCTGAGGCCACCGTGGTGCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756:ENSGALT00000043503:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(26.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACAGCACCAACCAC
R:
CTCATGCTTGGACTTGGAGCG
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]