GgaINT1025696 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21507791-21508552:-
Coord C1 exon
chr7:21508339-21508552
Coord A exon
chr7:21508013-21508338
Coord C2 exon
chr7:21507791-21508012
Length
326 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTCT
5' ss Score
0.9
3' ss Seq
TGCCCTCCATGCACCTCCAGAGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
CATTTCCATGAGGCTGCATACATGGCTGATGACCGTCAAGATCTCCTCAATGCAATCAATGAGTTCTTGGACTGCAGCATTGTCATTCCTCCATCTGAGGTGGAAGGGAAAGACTTACTCAAATCCATTGCCACCTTCCAGAAGTTGCTGCTGAGGAAGAGGAAGGAGAGGGAGCAGAAATCCATGAAGGAAGGAGATGTCCAGGAAGCCAAAG
Seq A exon
GTCTCTCCACTCACATTTGGGCAAAAGAGTTTGTGCCTAGTGCCCTGCGTGCCCCAGTGGGCCCTCCCCTCACAGAGCCTGGCAGAGGGGTGAGCAGGGCCTGGCTCCAGCAGTGGGCAGTGGTGGTGGGGGGCAGAAGGAAGGGGTATAATGGAGGCAGGACAGAGGCTGTAAGCAGCTGGGGGCACCTGGAGGCTGTGGGATGTGCGGTTATGGGAGGCCAGATTAGCATGGCAAGAGGAAGATCTCCATGGGGTATGGAGAAGGGCAGCCCAAGGGTGGCCCTGAATTCCCTCGCTCAAGCCCTGCCCTCCATGCACCTCCAG
Seq C2 exon
AGCTGTGTGAAGTGAAGGCTGAGGAAGAAGAGGAGGAAGCTGAGGATGACCCTTTGAAGAGGACTGGAATATTTTTTGGAGGTCTGGTTCGGGACATAAAGCGCAGGTACCCCAAATACCTCAGTGACATCAGAGACGCCTTGCACAGCCAGTGTCTCGCAGCCGTTCTCTTCATCTACTTTGCTGCTCTCTCTCCTGCCATCACCTTCGGGGGACTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.5=50.0)
A:
NA
C2:
PF0095516=HCO3_cotransp=PU(28.8=76.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGCATACATGGCTGATG
R:
AGGCGTCTCTGATGTCACTGA
Band lengths:
345-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]