GgaINT1025698 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21506542-21507405:-
Coord C1 exon
chr7:21507257-21507405
Coord A exon
chr7:21506737-21507256
Coord C2 exon
chr7:21506542-21506736
Length
520 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
TGTTACCCTTTCCATTTCAGTTC
3' ss Score
10.79
Exon sequences
Seq C1 exon
GAGAGAAAACTGAGGGTCTCATGGGGGTCTCCGAGCTGATAATCTCCACCTCGGTTTTAGGGATCCTCTTCTCCCTGCTTGGAGCCCAGCCGCTCCTGGTCATTGGCTTCTCAGGGCCTCTGCTGGTGTTTGAAGAAGCTTTTTACAAG
Seq A exon
GTACTTGTGAGGCAGCATCCATTCGTGGCACCCACTCACTCTGCTGATGCACTGGAGGGGGCAGTCAGCATTTCCCAGGTCTCCAGAGGGACTGCGTTATCTGGATGCTGTGGGTCCTGCCAGGCTGTTCTCAGCTCAGCCAGGGCTGGTTCTGTTTGTGCTGACCCACTGCAGGTCAAACCACTGGGAGTTCTGTCTCCCATTGCCATTTCCCATGGGCTGACCCTGTTGAAGTGTGACAGTGGTAACAGTACTCCTTATCTGCTGAGTGCAAGGGAAGCTTTGTCCCCCAGCCCTGCATCTCATCCTTCCTGACATATTGAGCACATGTAGCTGCATCCTAAAATACTGCTCTGGAGTACTTTACCTATGACTCCAGCCCTGAATTTGCTGTCTCTTTGCTGGATGCCCGTGGAGAGGAGAATGCCTTTTTTCCAGGAGAGACTGTGGTCTTAATGGGGAGAAGACAAGGGAGAAAGCCTGAGGAGGCGTAAGTAATTTGTTACCCTTTCCATTTCAG
Seq C2 exon
TTCTGCCAGACACAAGGCATTGAGTACCTGACAGGCAGAGTGTGGATTGGTTTGTGGCTCATCGTTTTCATCTTCATTATTGTGGCAGCTGAAGGAAGCTTCTTGGTGCGCTATATCTCGCCCTTCACCCAGGAGATCTTTGCTTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTACAAACTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(24.7=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(32.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAACTGAGGGTCTCATGGG
R:
CTTGTACAGTTTGTAGAAGGTCTCGT
Band lengths:
342-862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]