GgaINT1025701 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21503358-21505193:-
Coord C1 exon
chr7:21505104-21505193
Coord A exon
chr7:21503525-21505103
Coord C2 exon
chr7:21503358-21503524
Length
1579 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTGTGGCTACACCATCAGAAG
3' ss Score
1.99
Exon sequences
Seq C1 exon
GCTCGGCGGATCATTGGAGACTTCGGGATCCCCATCTCCATCCTAGTCATGGTGCTGGTGGATTACACCATCACAGACACGTACACACAG
Seq A exon
GTAGGTGCCAGCGCTGCCTCGGAGCCCCTCCTCCAGCACAGGCAGTGATCTGTGCCATACCGTGTCCTGCTCTTGTGCAACTGGGGATTTGCATTTCCTGCCTCGTTAGTCATAACAGTGCAAAGCAAGCAGATACGCTTCCCTCAACCTTACTCCCACACTGAAGGGAGGCTCTGAGGGTCTATCTGAGATGGAAACCAGAGCTACAGGGGCTGGAGTGCTCCGGTACCCCTCTGATGTTCCTGCTGTTAGTAGAGGAGGTTTTAGAGGACCAGAGAGAACCAGTGCAGCTAATTCCCTGTTTGTAACTCTAAAACCTTGTATTTAATCAACAAGACATAACCAGCTTATTCACACTGAAAAGGATACCGTAGAATAGTTTCAGTGGTGTACTCAGTCGTTTTTTTAGTTCTTACATGTATATGCTCTCCTTGTCTATAGACTACTAAATATTTTAATCATTTCATCTCAAACACAATGATCTCTTTCCCAGCTTATGCACAAACTTAGGTGTTATCAAACATACCCATCTCACAGATTTCCTTCCCCTCCCTCCCCTTTTTTAATAGATGCACTGTTAATTTTTTTTGTTTTGGTACTTATTTCAGCTAACATTAGGGAGAGGGTAAAAGGCAGTTCCTGTTTGGCATGCAAGCTTTTTATAAAGGCAGCCCAAGGCTTAATGGATTCCAAGTGTATTCTTAGTAATTTAAATCTCAATGTAAAATCTGGTTTTATCAGACGACAGTAAAATCATATGCTTTGTTACATCCTTTTCATACCCCTCTATGCTTCTACAGTTAATATCAAAAGCATTATCATTTCAGTATTAACTCAGCATATGTACAAAGCTTCCTGAGAAAACAGTACTTAGTTACGCAGCTTAGCTCAAGTACATGCATTCCAGAAATATTATTCATACTTATGCTGATTAACATAAATGCAAATCATAAACTCTTACTGCAGTGTTCATGCAGACAGATAGCAAGAGCTGCTGTAGAGCACTGTAGAGCCCAGAGTTTAAGTGCTGGTGAACACAGGGTTGGGCACACAGATGGATGGGAGTCTGTGTGGTCTGTGATGGGAGCACAAACTTGATGTGCCCTCTGAATGTGCTAAGAGTGAGGTCATTTCCAGAGAATGTGGCCAGTTCCGGGGCCCACACTGCAAAAATAATACTGAAAAACATCTCAGAAAAGGCTTAGTGTTTGGAAAAGCACCTCAGAGAAGAGTTACCAGTCCAAGATGTTTGGTTTATCCAAGCAGAGGTCAAGGAGCATTTTAAACATGATCTGCAAGCCCTGAAGTGTGGGTGAGGTTCCTGAAAGAAGACAGATACTAGCCTCTTGGGCAAAACCCGAGTGAATTCCAGAAGCTAAAAGAGGAAATGAGACAGGCTGCTGTTAGGAATAGGGGACATGGGATTTTTTACACTGAAGTGGATAACCCATGAGAAAGCTCGAGTCAGGGTGGTGTCCCATCACTAGAGGTGTTCAGACCAGGGTGGCCAGGAGGATCAAGGCTAGTGGGCATGTATGTATTGATGAGTAACTGCTTGGTTTTGTGGCTACACCATCAG
Seq C2 exon
AAGCTGAATGTCCCATCGGGCCTGTCGGTCACATCTCCTCACAAGCGTGGCTGGTTCATTCACCCCATGGGCAGCAGTGGGACCTTTCCATTGTGGATGATGTTTGCCTCTGCCATCCCTGCCCTCCTGGTCTTCATTCTTATCTTCATGGAGACGCAGATCACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(18.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCGGATCATTGGAGACTTC
R:
GTAGTGATCTGCGTCTCCATGA
Band lengths:
254-1833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]