GgaINT1025709 @ galGal4
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21520023-21520971:-
Coord C1 exon
chr7:21520829-21520971
Coord A exon
chr7:21520235-21520828
Coord C2 exon
chr7:21520023-21520234
Length
594 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGTCTCTTTGATCCCTACAGCCT
3' ss Score
6.26
Exon sequences
Seq C1 exon
TTCACCATTGGCAGCGATGAGGATGAGTCTGGCAGCACTCTGGCCCCAGCGCAGTTCCATGTGGAAGAGGAGTGTGGCATCCTGTCCTCCACACCATGCCTCACTGACCTGCTACAGGACAAGGGCCCTACATCCCTCTGCAG
Seq A exon
GTAGGAGGGCAGGTGCTGAGCTGCTGCCACTCTCCCTGACTTGGGTCACCACACAGACCCCGCACTTGGTGTTGCACAGAGAGGTGTGTGGCTCTGCCCAGTCTCAACTCTCCTGCTGAACCACAGAGACTGTGGAGCCCAGTGATTGCAGCAACACTGCTGCTCTCCAGCAGGATGGTCACTTTCTGGGACTCCTGGGACTTCTTTGTGTTTGCGGGTTCCTCAGGATGTGGGTTTGAGGGCACTGGGTGCACATGTGCCGTAGTCTTTCTCTCATCTAGCTTGTGTTGTGGTGCTGACCAGCAGGCTGGGAAGCCCAGGAGGCACAGCACAGTTGAAGACCATGAGGTCCTCAGCTCAGAGGTGTGTCTCTAACACATACCTCAGGCTGATCCTGCTCTGCGTTGTGGGGCAAGGAGGAGCAGAAGGGTTGGTAGGACAACCTCTAGGTGCTGGGACAGGTGACTTGTCACTCTGCTCCTTCTCAGGGAATTGTTTTTCTGGGCTGGGCCAAGGGGTCCCATTCCCTGAGAAGAACCAGTGCCTGCCACCACTTATCTCATTTTCTACCATCAGTCTCTTTGATCCCTACAG
Seq C2 exon
CCTTCCTGGACCCCGGGAACGTGTTTCTCAGGGCTGGGAGAAGCGCAAGCCCTGGGGCCAGGTGGCAAGTGGACAACGAGTTACCTATGACTTAAAGGAGAGGATGTGCATCGGCAGTATGACCACGCTGGAGAGTGCAGCATATCAGCGTGTCCCCACGGATGAGGCTGAGGCCCAGATGCTGGCATCTGCTGATTTGGATGGCATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.681
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCATTGGCAGCGATGAG
R:
TCCAAATCAGCAGATGCCAGC
Band lengths:
344-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]