GgaINT1026496 @ galGal4
Intron Retention
Gene
ENSGALG00000005298 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr17:4873672-4874268:+
Coord C1 exon
chr17:4873672-4874069
Coord A exon
chr17:4874070-4874160
Coord C2 exon
chr17:4874161-4874268
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACCTCATCGCTGTGCCCTAGAGA
3' ss Score
6.26
Exon sequences
Seq C1 exon
AGCCTGACTGCCCACTGCCACCAATGCGCCATCGTCACCAGCTCCAGCCACCTCCTGGGCACCCACCTGGGTGCTGAGATCGACCAAGCCGAGTGCACCATCCGCATGAACGACGCTCCCACCACCGGCTACGAGGCCGATGTGGGCAACAAGACCACCTTCCGCGTGGTGGCCCACTCCAGCATCTACCGCGTCCTCAAGAGGCCCCAAGAGTTCGTCAATAAGACCCCGGAGACCGTCCTCATCTTCTGGGGGCCGCCGGCCAAGATGCAGAAGGGGCTGTTGAAGATCATCCAACGCGTCGGCGCATCCTTCCCCAACATGACGGCCTACGTCGTCTCCCCGCACCGCATGAAGCAGTTTGATGAGCTCTTTCGGGGGGAGACGGGGAAGGACAG
Seq A exon
GTACCGGGAGCTCCTCCTCCCCTCCTTGTGCTCTGCGGGTCCCCACTGGTGGGTTGAGGACCGTGAGGGTCACCTCATCGCTGTGCCCTAG
Seq C2 exon
AGAGAAGTCACGCTCGTGGTTGAGCACAGGTTGGTTCACCATGGGGATTGCGGTGGAGCTGTGCGACGCCGTCCACGTCTACGGCATGGTGCCCCCCAACTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005298:ENSGALT00000008495:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(54.1=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAAGGGGCTGTTGAAG
R:
GAACCAACCTGTGCTCAACCA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]