MmuINT0153259 @ mm9
Intron Retention
Gene
ENSMUSG00000026811 | St6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:MGI Symbol;Acc:MGI:1355316]
Coordinates
chr2:32470301-32474124:+
Coord C1 exon
chr2:32470301-32470707
Coord A exon
chr2:32470708-32474016
Coord C2 exon
chr2:32474017-32474124
Length
3309 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCA
5' ss Score
7.88
3' ss Seq
TGACTCCTCTCTGCCCCCAGGGA
3' ss Score
12.06
Exon sequences
Seq C1 exon
ACGCTGCCGTCCAGGTGCAACCAGTGTGTGATCATCACCAGCTCCAGCCACCTGCTGGGCACCAAACTGGGCCCTGAGATTGAGCGGGCTGAGTGCACCATCCGCATGAACGATGCTCCCACCTCTGGCTACTCGGCTGACGTCGGAAACAAAACCACCTTCCGCGTAGTGGCCCATTCCAGTGTATTCCGTGTGCTGCGGAAGCCCCAGGAATTTGTCAACCGGACCCCTGAGACGGTGTTCATCTTCTGGGGACCCCCAAACAAGATGCAGAAGCCCCAGGGCAGCCTCCTGCGCGTCATCCAGCGGGCGGGCCTCATGTTCCCGAACATGGAGGCCTATGCCGTCTCTCCCGCCCGCATGCAGCAGTTTGACGACCTCTTCCGGGGTGAGACGGGCAAGGACAG
Seq A exon
GTACCAGCCTCCCGCCTGCCCACTGCGGTCACCCCTGGCCTGATGCTCCCAGCATGCACTGTTGAGGCTCTAGTCACTTCTTGCCACCCTCTGGTCAGGTTCCCCCAGCTCTCTTCATCTTTTAACATGAGTGAGTCACCTTCAGGGTGTTGGCCATGGCCTCAGCATGCTCCCTTCTCCCCCCAGCATGCTCCACTCCAAGGGAACAGGGGCTCCCAGAATGCTCTGTGTTAAATCCGTTCCTAAGTCTGTGGTTCTCAGCCTTCTTAATGCTACAGCCCTTTAACACATAAAGTTCCTCATGTTGTGGTGACACCACCCACCCACCCCCGCAGCCATAAAATTACTTTTGTTGCTACTTCATAGCTGTAACTTTGCTACTGTCATGAATCGTAATCGGAACATCTGATATTCAGGATATCCATCGGTGACCCCTGTGAGGTCATTTGACCCCAAAGAGGCCATGGCCCACAGGTTGAGAACCATTGTTTAGGCGGTAGTTCCTTCCCATAATGCCGCACTTAATGCAGAGTCTAGACTCTAGACTATTCCCAGCATGCCTTGCTTCCAGCATGGTCTGTTCTTAGGAAACAACTTTCCTAGCATGCTTTTTTTCTCTGACAGCCCTAGAAGCCTAGTCGTCCCTCCTATATAAACACAATGTGGGCCACATGTAATTTGCAGTTTTATGGTAGCTATATCAAAAAGCAGACAAAATAATAATAGTAGGTACATTTAAATTTAATGTTATTTTAAAATATGTTCGCCGTGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGTAACCCTGTCTCGAAAAACAAAACAAAAAAATGTTCAACATACAGCTTCTATACATGTGGTGGGAGTTTTATACCTTTTTTTTTTTTTTTTTTTTTGACACTGTGTATGAGCCTTTTGCCTGCATGTGTCTCTGCACCACATGCATACCCGGTGCCTTACGAGGTCAGAAAAGGGTGTTCTGCCTCCTGAAACTGGAGTTCCAGGCAGCTGTGAGCTACCATATAGGTGCTGGGAAGTGATTCCCGGTTTTCTGGAAGAGCAGTAAGTGCCCTTAACCACTGAACCATCTTTCCAGCCTCCTTTTACACCTAATTATTTTTAAAGATTTGTAGCTATTACAAGTGATTCTTTTTAATTTTAGCTTTTGGCTCACAGCTATTCGTTGTTAGTTTATTTTTCCTGTGTGTATGTATGTGTGGGTGTGTCCCAGTGTGCATGTGTACAGATGTGCACACGTATGTGTAGAGTGCCCAAGCTGAGGTCAGATGTCTTCCTGAATCACTCTCTGTTTTATATACTGAGGCAGACGCTCTCCCTTGAACCCAGAGCTCACTGCTCTGGCTAGGCTAGCAAGCCAGTTTTTCTAGGTATCCTGTTTGTCCCCACACTCAGCACTTGAATTACAGATGGGCACCGTGCCTACCTGGGACTCGGGTGGATACTGGGAGTCTGATAACGTAGCACTTGCACAGTGTGTCACCCACTGAGCCCCCTCCCCAGTCTATTGGAAGTGTGGAATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGAGTTTTTTGTTTGTTGACTGTTAAACTCACTAGTTTTAGACTTGTAGATTCTTTGTGATGTTTTTCACATATTAATAGTCATGTTCTCTGTAGATACAGTTTCCTTTCTTCCTCCCCAATCCCTGTCTTTTCCTTGCTCCTGCCCATTGCACTGGCTAGGGTTTCACCCCGGGCTGGTTTGGCTGTAGTTGTTCTTTCTAGGTTTGAGCATCGGCGTCACACATTGAAGAGCGCCCTGCTTCTGTTTTGTGTGTGCGATTGTGCAGAGCTTGTTTCTTTAAGTCTTGGGTAGAGTTCGCTGCTGAAACTGTCTGGGCCTCAGGCCTCCCTTTCTAGATGTTTAGTTTAGTTGTTTTAGTTTTTAGCTCTAGGGGTGGGAGTCAGGGCCCAAAGAATTCTAAGCACACATTCTATCATTAGAGCTGCATCCCTATGCTCCAGGATTACTGCTGATTCAGCATCTTTAATGTTCTAGTTGTAGAATGTGCAGGCAACCTTGCTCATCTTGGGTAGTTCCCAGGTTTGTAGGAGTCAGCCCATTTCATGTAGGATATCAGATTGATATATGTAGTTATTGGTGGACTCCTCCCTTAGCATCTGTAAGGGAATGCACAGATAGAGATAGAGATAGTTATCTGTGGACTCCTCCTTAGCATCCATAAGGGAATGCAGTCATTTCCTTTCTTCTGGTCTTTGGCAACTCTTGTCATCTTTGTTTTCTTTAACAGACTTGTCAGATTTTACATTTCCTTGTAAATGTCTCAAAAGAGCCACTTTCCACCAAATACATGCAAAACATTTCCAATTTAAGGTGTAAGGGGTGGGGAGATGGTTCAGTGGTTAGGGGCACCTGCACTCTTCCAGAGGACCTCAGTTTGGTTCCCAGCACCCACATCAGGACAGACGGCTGGCTCACAGCCACCTGTAACTCCAGTTCCAGGTGATCTGATGCCCTCTGCTGGCACTTGTGAGCACTGCATTCATACGTGTATGCACACAGACATACACAAGGCACGAATTTCGAGGACAGCCAGGGCTGCAGAGAAAGACCCTGTTTCAAAACAAATGAGTAAAATGTAAAGTAAAACAACAATATATATGTTTATATATGCACACACACATATACATACATATATTTTTTGGAAAGATGTAATCAACATTAAATTCTGCATTCTGCTTTTCACACTACCCAAGGACTCCAGTGCAAATGTGACAGCACTGCTCAGACACATATCAAGTGCTTCCTAAGTCACCAGGCCTGGTGGCTGCTGTAGCCCCAGGGTCTCGGCTGTTTTTCATGCCTTGCTCTGTGTTCATCTCCGAATCATCTTCTCTGACTTGTATCCACACAGGAGTTTTGTCCCAGGGGAGGAACAGCTGCTGCTAACAAGCTTTACGGTCACGGCTGCTCCCAGCCTGCCCTGTTTAATTAGCCTCTTGAGTTCATGCCCTGTTTCCTCTGTGCCCTCCCGTTTGCCAGCATGAGTGCCCCCACAGTGGGTGGTACACCGGTGTCTGATATAGAGGCAGAGCCTGAACAGACGGTGGGTAGAGCTGGGAACCTCCGTGGGGTTGACCGTTCCTCCTTGCCTGCTCCCTACCCCGCCTGATTGTCCCTTCATTGTGACTCCTCTCTGCCCCCAG
Seq C2 exon
GGAAAAGTCCCATTCCTGGTTGAGCACGGGCTGGTTTACCATGGTGATTGCGGTGGAATTGTGTGACCATGTGCACGTGTATGGCATGGTCCCTCCTGACTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026811-St6galnac6:NM_016973:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PD(48.9=95.7)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(13.4=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: