GgaINT0038984 @ galGal3
Intron Retention
Gene
ENSGALG00000009021 | Q6ZXY4_CHICK
Description
NA
Coordinates
chr8:19965194-19970437:-
Coord C1 exon
chr8:19970028-19970437
Coord A exon
chr8:19965302-19970027
Coord C2 exon
chr8:19965194-19965301
Length
4726 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AATTATGTTTTTGCTTTCAGGAA
3' ss Score
10.45
Exon sequences
Seq C1 exon
CCTTTAAAAATGCACTGCAAGAGCTGTGCATTGGTAACCAGTTCTGGACACCTTCTGGGAAGTAAACAAGGTGACAGAATCGACGAGACGGAGTGCGTAATACGAATGAATGATGCACCTACTCGAGGTTATGGACAGGATGTTGGGAACAAAACAAGCCTTCGAGTCATTGCACACTCCAGCATTCAGAGGATTTTGCGAAATCGCAATGAACTCTTAAATATGAGCCACGGTGCTGTGTTCATCTTCTGGGGTCCTAGCAGCTACATGAGGAGAGATGGTAAAGGCTTGGTGTACAACAACCTGCAGCTGATGAATCAGATACTGCCTCAATTAAAAGCATACATGATTTCTCGCCACAAGATGCTTCAATTTGATGACCTTTTTAAACGGGAAACTGGGAAAGACAG
Seq A exon
GTGAGAAAATTTACGGGGATACATTTGGGGGAAGTCATACAGTAGTAAAATAATGTAGTTTATATGTACCAATTTGAGGTCTGCTCAGAGGGACCATCACACCCATTAAATCCTCCACTGCGTGAGTTGTGATACAGTATAATACGCCAAATAACATCACTTGCAACGTAAGTAAAAAGTATGCCTGTAAATAATTGGTATGGAGTATTGCCTCATCAATTTGGAATGCCAGCATCTGGCTGTACTGTTTATACAGCCAAGGAGGTAGGAGCTGTTTAAATCTCACTTCTGAGGTTATATACCTGAAAGTTTTTTACTGATTCTGAAAAATCAGAATGGATAGGTTATGTTTCCTTACAGAGGAAATGCCACCATTCTGTGAATTATAATAGCTGTTTATTGAATTTAAGCATTCTTGGAACACTGCAGCTGTAAAACTTCATGTAAAACAAACAAACATTAGTCATACATTAGGTGCTTCAGAAGCATTTGCCTTACAGTTCCAACTGGGAAAAGGAAAGTTATGATAGTTACATCTTTATGAGACTGTTTATGACTTGTAGGCTCATCTTCAAATCAGAATTTTAATAGGTGACCCACTGCAGGACTTGAGCATTTTCACATACAGTGTTTGAAAAATGGGCATTTAAGCCAAAGACTTCCTAGAGAGAAACACATTTATTTTTAATGAATTCCTGTTTTTTAAATATTAAATATGTAGCTGTAAAAAATCAAACAGGGTCTCTACTGAGGTTCAAATGAAGAGGTGGCTTCCATTGCACAGTAACTCATGGTGAGATTCTCTAGTTTTACCAATAGTGTACATATGCAGCACAGCCTGAAGCTGGGCTTGGTCCTACGCAGACAGAAGACTTGAGCACCAGATTTGTGTTTTGGGCAGAGCCAGTGGCTGGGAAGTTGTTGTATCCTAGTAGCTGGGGGTGACTGCATCTTAGCTTGGTGTCCATTGTACCCCGTCTGCTTTTCTTTCAGAGTTCTGTTACCGTGGATCAAACTAAGCATCTCCCTACTTGACTGACTCACACTAACACCAGCCCACACAGTTACCTGTTCAGTTTCTGACCATTAAAGGTCCCTTCCTCTTCATCCTCAGAACAGTGCTTGTGATTCTCTGCCAGACTCTGCTTCTTGCAGAACGAGAGGGAAGGATAACAAGGAGGGTACCCTCCCAGGTCAGCTGTGGTACAGTCTTTTCCAGATTTGTTCACACAGAATGGAGCAAAGCAAGGAGGTTATAATGTTATTAATTAAATAAACATTTGACCCTTTTAGGAAAAGTGCAAAGGATTATTAGTATGCCCAGTGTTTACAGCAGCATGAAAGTTCAAAGAGTTGTAGCAGAGCAATAGCGTGGGCCACCATCAGCCCTAACAGTCAGCCCTGCACGTTGCTGCATCCTGCCCCAGATTACTCTTTTCAGGGTAGGACCATTTGAAATCCCCATTTCTGAGGACCAGCTCACCTCCAGTCTTTCAGTCCATGAGGAGCTCAGGTCCATTTCTTTCTGGACAGCTGCAGTGCAATCAGAGGCAAACTGCTGCTTTCTAACTCTGGATTACCCATTTGGAGCTGGAGGCCAACAGCCATGCATGGGGTGAAAGCATTTCTTTTTCTGCACAGACACCAGGCCCAGTCTTGGCTCCCAAAATATTCTCAAGGAGTCTGAGACATTAATAACATTAGAACAGCTTTGTAGTGGGGTCCGTCATAGGCACCCAGCATGAATCAGTGGCACATGGATCCTAGCAGAACACAGCCTCGTTCATTGTATGGGTCCTATTGCATTTCAGCAGCTGCAGGCTTTGCAGGAACCACTGCTTTGTAGGGCACATGCAGCACACGTGAAGGACTAAAAGATTAAAACAGGAGATGAAAACAAATGAATAGGCAGCATGGAAAAAAGAGAGGAAAGATGAAAAGAAACACGGGCAGACATTGTAAGGGAGGAACATTTATGTAGCTGTGGGGGCAGAAGCAGTGCATTGTATGGCCTGGAGTGATGCCGTTCCCTGGGAGGTTTCTGCTGAGCTCTCGATATTAATGCCTGCAAAAAAAAACAAAGGAAGGAGAGAAGTGTGACTGCAAGGTTGCAGTAATCAAACCATTTCTTTGTCTTGGAAATGATGAAGAAAAAGGTAATTGGATGCATTGTGATTTACAAAAAAAAAAGCTGATTCTGAAATGAAGGAAAACCTTCAGAAAACGCTGTCAGTTAAATAGTGTGGTGAATGACAAAGGCTACAGAGCAGTATCCTTGGTATTATAAAGTAACTGTACTTGAAAATAACTTTATAATTGAATAAGGGTACATTAAGAAAATATGATTCAGAACCAATATTATAGTAATTAGATAAAGGAAGCATAAATGAAATAACTGCAGGAAGAGTATTTCCATAGAGATTATAAATGAGATTTTGGTGGAGCAGAAAGGCCTTTAATTGTAATTTAGTGTGCACTACAGAATTATCAGCACAGTGTGTTAGTTCATAGTATAAAAGAATATCTGATAATTTTCCCTAATAAGCACATGACAGTTCTTCATATTCTTTCATTACAGCTGATTAGGTATAAAAACAGGATTCTTTTGTTAGAGTTTTGTTCAGATCTTTTATGAAAAGGCAAAACGTTGTAACCCTGTTTCTGCAGTGCTGTCCTACAGACACGGTATTGAAAGAGGCCAGAGCGGTACTTGAATAAGTTTTGAAATCTTTATTCCATTGTCTGGCTTTTAAGCTCGTTTATTCCAAGTCAGTTCTCTGATTTACTGAAAACACTGAATTGCAAACTAAGTGTGTGTAAGCAAAAAGGAAAGTAACCCAGCAGACCGCCCCGCTCGGTTCCCTGCCGTGTGCAGAACCCAGGTCATGGTCTAAGCACAGTTGCTCTCTTGGTTTTGGATGCAAGGTTTTAGGCATGGACCACTCTAAGCCCAAGCACGTTCCTAAATTACCTAGTGAGTCAGAGGCAGGAAAGCAATTGTTTGGGTCTTTATTCTGCCTTTCCTTTCCCTAATAATTTTAAGCCAGAAATTATTTGCTGTTTTCTTGCTATGCCTGAAGGCCTCTGCTGAGCTTATGACCCAGCTACTACATTGTGATAAATTATGCCCTCCCCCCCCACCCAAAGCCTAAGTGGAAATCCAGATAAGAAATAAGGCCCCTAAGTGGAACTAATGAGATGTGTAGATCAGTTAATCTCCAAGTGCTAGCTTAGCCCTGACTGTACGTTCGAAGTAGTAAATACATGTTTTGGGATCTTGTACGTTACCATGTAACTGATGAAAGACGGGGCAGATCACTGAGGCTCCCCAGCATCCTCTATACCACTTTGTTGTTGCTGCTTACCTTGCAGTAGTCTAACTCACTGTTCACTGAGGAAATGGGAGACCTCAGTACCAGGCATTCCTCAGTCTAACAGCATTCAGGACATCTGTCTTACTGTCCTGCAGATGACCTACTTGGAGCCCACTTAGCACTCATTTGGGAAGCTGCAAAGTGTGCCCTTCTTTGCTGAATTTCTGTATCAGTGATGACAGCACTTGCTTGTAGTGGCTGTTGTTGTTTTGGGTCCCTCCTTCCAAGATCAGTGCCTGACTTGGTCTTGCATGGCTGTCCTGAATACACAGTTATACCTTTAAGACTTGCTTCTCACCAGCATCTCTTGGTGCTTCTGTTCCAAGACAGCCAGCTGTTCCCAGGCACAGTGCATGAGCTTGACACAACTGGGGCTTCCAGCCCATGTGCCAGGCAACCAGTAACCATTACAGTAGCCAGCTCTTAACCACTAAGCAGCAGTGACAAGCAAGTGCTAGAAAGAAAAAAACACTACTGTTGCCAATTTGTAGGTAAAATTTTGTGACAGAGCACAATTTTAAGCGTAGGTTTTAAATCTTAAATCTGCGAGAGGTCACAGGGTGATGTCTACTAATTCTGCATAAATAATGCTGGGATCAGTTGGGCTTCTTTGAAGTCTTCTGCCATCCTATGGAGAAGGCCAGGAAAGGAGCAGCCACGCAGGGTGCCCTTGCAGCACTCTTTGGTCATATTCAAAGGTGCCACCAGGCAGGAAAGGGACTCAGGGCATGCAGAGGGTTGGGGTCCAGGGGAGAGCTTCCCAAGTGGCTGCATCTAACCGAGCTTCCTACCAGCAGTCACAGGGTGCGGCTGAGAGCTTCTAGATTGTGGACCAAGGTGTGAAGGCAGATGATGAGACCCATCTCTTTCTCTACCAGACACGCTCCTTTGTATGCTGTGGGAGGTTGCATTTTAAGCAGCCCTCTTCCCCATGATGTGTCTTATTGACAATTTTAGTGTACAAGTTCCATTAAGTGATTACAGATGGGTGGCGTTTATCCAGCATATTACTAGCAGGAGTATGTATATACAGGGCATGAAGTTTCACTCACTCAAGTTAAACTTGCCAAAAGGTCGGCTAAATGTTAACACTGCTATGCCCAAAATTAATTACAGACAGGGTAGTTTCTGCATAGATTAGTCGACTGACAGAAGACATTAGTAAAAACTGTTAAAAGATGAATGAGCAAAGTCATCTTGGTTGCTCAATTTTCATAACCTCTCATAAAAACAAACAAAAAAAATAATAATTTATAGCCTCTTAGAAATGAAAAAAAAATGCCCAGAAATTATTTCAGCTACTTCAAGAATTATTTGTCAGACTGGAAACTTAATTATGTTTTTGCTTTCAG
Seq C2 exon
GAAGATATCCAACACTTGGCTTAGCACGGGCTGGTTCACAATGACTATCGCCTTAGAGCTGTGTGACAGGATAAATGTTTATGGCATGGTGCCACCGGATTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009021:ENSGALT00000014679:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(50.0=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]