MmuINT0153252 @ mm10
Intron Retention
Gene
ENSMUSG00000039037 | St6galnac5
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:MGI Symbol;Acc:MGI:1349471]
Coordinates
chr3:152840144-152846670:-
Coord C1 exon
chr3:152846261-152846670
Coord A exon
chr3:152840252-152846260
Coord C2 exon
chr3:152840144-152840251
Length
6009 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TTCACCCTTGTTCCTTCCAGGAA
3' ss Score
10.83
Exon sequences
Seq C1 exon
CCCCTGAAAATGCATTGCAAGGATTGCGCCCTGGTGACCAGCTCAGGGCATCTGCTGCGTAGTCAGCAGGGCCCCCACATCGACCAGACAGAGTGTGTTATCCGCATGAATGATGCCCCCACCCGAGGCTATGGGCTTGACGTGGGCAACCGCACGAGCCTGCGGGTCATCGCACATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAATGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGCCGGGATGGCAAGGGCCAGGCGTACAACAACCTACAGCTCCTTAGCCAAGTGCTGCCTCGGCTGAAGGCCTTCATGATCACGCGCCACAGGATGCTGCAGTTCGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAG
Seq A exon
GTACAGGGCACCAGAGGGAAGCAGGGGGCAGTGAGGATGTGTGCTGGGGACAGACTCACTAAAAGCCAAGCCAAAGCTGTGAGCCCGTGGCTCATGTCAGCAACATCAATGGGACTCACATGTCGGGTCGCCCTGGGAACACTCTGCTCAAGTTGAGTGTATCAGGCACAGTGGCCTGAAGCACAGTGACCATTACTGAGTAATTCATGGCCAAGTTCTTATTTTTAAAAAAAGGCTAAATGGAGACTGGGCTACTTTAGGAAAAGTGGGACACAGTAATTTCATTTATCGAAGACAGGGTGTGGAGATGAAGCTCAGTTTACTAAGTGCTTGCTTCCTTAGCATGAGAGCCCAAATTTTATCCTTAGCTCCATAGGGGAATGGACATGGTGGGACCTGCCTAGAATCTCAGTGCTAGGAAACTGAGACAAGCAAGTGCCTGGGGCTTGCTGTCAGCAACCCTACCCTAGTCTACTCCATGAATTCCAAACCAGGGAGAGGCACTGTCTCAAAAGACAAAGGGGACAGCACCTGAAGAATGATAGGTTGACCTTTGCCATCCATATATTAATAAACATGCCTATGCATTCACATTGATACACAGAGAGAGAGAGAGAGAGAGGCAGAAACAGACACAGAAAGAGACAGAGAAAGAAACAGAGACAGACAGACATACACAGAGAGACAGAAACAGACAGACATACACACACAGAGAGACAGAGACAGACGGACATACACACACAGAGAGACAGAGACAGACAGAGACTTGTAGATAGACACAGAGAGACATAGAGACAGACAGAGACAGACACAGAGAGAGACAGAGACAGAAACAAATAGACAGAGACAGACAGACACACACAGAGAGAGACATAGACAGACAGACAGACACACACACACACAAACGGACAGCAGGCAGAGAGACAGAGACAGAAACAGACAAACAGACAGACAGACACAAACACACACACACAGAGACACAAAGAGAGACAGAGACAGAAACAGACAGACAGAGACAGACAGACACACACACAGATATAGTCAGACAGACAGACACACACACACACACACAGACAGAAACAAACACACACACACAAAGACATAGTCAGACAGACAGACAGACACAGAGAGAGAGAGAGAATATTTTCCTAAGATACACAGTCATGCAGTCAACTGCTCATCACTGAAAACCTACTACTTGCTCAGCACTGCACCTTGCATGTGCCCCCTCTCAGAACAGTCAAAATCAAGACGCCACCCTCCAAACATACATCCTTAGATATTCACCAAGTAGTGATAGGAAGGAAATGGAGCAGTAACTTGTATGGCAGGAGACAGACCATGGTCTAGGGCAATGTTTTCCAAAATGCTCAAGAAGACTAAATAATGGTTGGAGAGATCTGGGTTCAGTTTACACATACACATAGTGACTTATAACCATCTGTAACTCTGGTGGGAGGGGATCTAACACTCTTTTTGGCTCTGTGGGCACCAGGCCTGCACATGGTACATACACATACATGTAAGCCAAATACACTTGCACATAAAGTAGACATTTTTAGAGATAGGATAATAGTGCATGAAGTTAGTGTATTCAGGAAGATTCTGCAGTAATGGCACCCGTCTGAGAATAAGGCGAAATACCAGTTCAGACCCTCTCACGTGATGGGGCCTGATGGTGATGCATGTGTGTGTGGGTGTGCAGACACAGGATAGTTTGCTTAGACATGAAAATGTTCTAAAGTGAGTAGTAAGGGTTGTATTTGAGAATGCACGAAAATCCAAATTCTTCAGACAAAAGAGCTGTGTTTTTCAACCTTGGGAGCTTTATGGCAGTTTGAGGGCTGGACCTGATGGTAATGGGCCCCAGGAGGGAAGCATTACTGTTGTCCACACTACAGCAGCCTCTTTCCTGGGAAAGACACAACAGACATGTGGCTACCACAGGCCAGACCCATGGCTAGCTTAGTGGGTCTATAGCTTGACTAGGAGAACTACAGTTAGCCAAACACACCTGTGAGTGGTCCATCACACTTATGGCAAGCTAACAGACCCAAGGCTAGCCCACAGCCCTACAACTAGCACAGCCCAGACCTGTGGCTAACCTAGTCAATCTCTAGCCCAGCCATGGATCAGATCACATGGACACTCCTGATTAAAAGTTAAGAGCTAATACAAATTCCTATCATGCCCAACCCTGTGGCCCAGCAACAGGAAACAGCCCTGAATGTTAACAAGTTCTTTCACCAAGAGCACATTTTATAAGGAATGACAAACAGCCAACTATTTACAACTAAATGTTGCTGCTTAGAAATTAAAAAAAAAAAAGTTTAAACTGTCTGAGCCATAAAAAAAGTGCATTCTCTTTTTTGTTTAATAATTATTCATTAAAAGTAAGTCTACCCAAAACCCTGGAGCAGGGTTCACAAAGACAGCTGCACACTGCTGCATCTCTGCAAGGGATCACACGATATGGTCGGCCTGGAGACTAAAGCATCCCACCCCTGTGACCTCTTGAGGTCCCTAAGGAACAGTCTCATATAAGACACACCTTACTCCTCCCTGTAGCCTGACCAGGGATGGCCTTCGGCTCAGACATCTCTCTTTGCTAGTCCAGCTGTAAGAAGTGAGCCAAGTCTTTGCAGCTGAGCTCCTGGGCCTCTTCCGCAGATATACCCCAGGTATCACCCACTCTGCCCTGCTCGGGCAATCTCACCCATGACCTTGTTGTATGCCGAAGCGTATCGATCCTTCTGAAGGAGCTTTGCATCTCTTACCTTAGGAGACTGTCTTTACAAAGCTAGCCTGCTATTGACTCATTATTCTTATGCGTCCTTATTCTTAGGCTGGGAGACAGAAACAGCCTTGCAGAACAGATTTCCACTTGCCTGAAACCCAGAACTTTTGGGTTGAAAATATTCCTTGTATGTAAGCAGAGACATCCAACAATATGAGCGCATATGTTGAAGACACATTAAAGAGTTGGCTTTCTATCCACACCAAACTCGTCACTGGAACATTCTGTTCAGGCTAATATTTTTTAAGACATGGGCCAAGTCAGGAGATTTTTGATTTATAGGAAGTTTTACCCTTAAAAATGGAGATGAAAATGACCCGTGAACACTCTGCAATTAAGAAGCCCCGCAGATGACAGAGATGGCCAAATCATGTTCTTTGATATTAGAAAGTAACTATACTTGAAAATAACTTTATAATTGAATAAGGGCACATTAGGAAAATATGATTCAGAACCAATATTATAGTAATTACATAAAGGAAGCATAAATGAAATAACTGCAGGAAGAATATTCCATTGAGATTATAAATGAGACTCTGGCAGAGCAGAAAGGCCTTTAATTGTAATTTAGTGTGCACTATAGCGTTATCAGCTCAGTGTGTTACTTCATCATATAAAAGAATATCTGCTAATTTTCTCTAATAAGCACATGACAGCTCTTCATATTCTTTCATTACAGCTGATTAACTGTAAAAACAGTAGATATTCCTTTGTTGGAGGGGAAAAAAAAAAGAGTTCCGATTCTTTCAGGAAGACAGAACAAAGCAGTTGCGTTTCTATGGTGTGTGATCCCAAGGCTATTATTTAGGAAGTCTGGGGAATTTTAAGTGGCACTTAAAAGAGTGCCTCACTTCAGTTCTTCTAGTCCTCCACTTTGTATTCTTCCCATTTCCACCTGCAGACCCCCTTCCTGTGGCCGCACATCCTCCTGTATTCTAGGCTGTGGCATCACAGGGAAACTTCCCAGGAGTTTCTGCTCCCAGGAAAGCCCTGGTTGGTGTTTCCTGGGGATGGAAAGGCAGAAGGTATGGGTGTGACCATTGGTTCCCAGATCTCTCAGGGATCTCTGGGATGTGAGTGAGGGTTGTGTTTTTCCTGGGCTCTGTCAGACTAGTCTGGGAAGAACTGCCCAGTACATTAACACAGCAGAGGTACGCACATGGGCTCCCCTTTAAAGGAGGGCTCTTCCTCCTCTTCCCATTCTCATTCAGTTCCTTCCCAGGCCCTCTAGCCCAAAGCCTTATGAAGGTGTAGCCCTAGTGAGAGAGCGGCAAGGAATATACTAACACCTGCAAAAGCTGGCACTTCTGTTCTTTATAAATGCTGCCCTGGCTACGGCTGCACCTCCTCCATCAGACCCCAGCACCAGAGGGTTGGAAGGGTCTTCTTCCTGGACACTAAACAGCACTGAAGGAATGCTAAATTGTTTACCTCGTCCACTCACCCCAGCAGCCAGGGGAGAAGAGAGGGATCTCTATGTGTCACCACCGCCCGCGCCTGGGGCCCTTTTGTGGATATTTTCTAACATTCTCAAATGGCCAGGGGACAGAGCATCTAGTACCTGCTTTGTAGATAATCTGAGGCTCAGGGATGAGCAGCAAGCCATCCAGGTTATCCAGCTGCACGTGACAGAAACACGAGAGTGTGGGGCTCATGCTCTCCTCATCTGTAGGGGCTGTGACAAGCTCGGTCAGGAAGCTCTGGAGAGGAGGAAAACATGTTTGAAGCTGAAGCCCACCCATGTCCGACAGGCTCTCTGCAAGGCAAAAGCCTTCTTGGAAGTATTTCCTATCCCTGCATGAAGGGGAATAAAGCAAACTGTTTAACAGTCTCCCTTCCCAAAGTGCGGAGCTCTGCAGTGCATCTGGAAAGCGCTTTCTTCAGCTCTGCGATTCACCTCACATACAGCTCTGTGGCTGGGCAAAGTCAGACAGTCTGACCTTGGGGATAAGGTGTTTGGAGCTGGCTAATGAGGCATGCCATGGCACTGAAGAAAGAAAAGGCAGCAGTCCCAGAAGAACTGAAATTAACACCCACAGCAGTGGAGCATGGAGACCAGTGACTCATTCTCAGGACTCAAATTAGACCTTGCCGATGTGTCTCCACTGGTCTCCTGCCGATGTGTCTCCACTGGTCTCCTGAGGCTGGGCTGCTTGTCCAGCTTCCACTCAGACGTCTGAATGCACATGTTAGTGAATGGCAAAATGCACAGATTTATTTCCTTAAACTTGTCAGTTTGGGACTTAGACATTTCAGAAGGCTCCGAATGACCTTAGGTAAGGTAAATGTAGAGGCTCTATGAGATGCAAGCATACTTCTGGCTCTCTTCCTCAGCTCTTCCCAAGCGCATGTGCTCCTAAGAAAAGAAATTCAGTCATAACGCTGGTGTTCTTAATGTGCTTTGGGACAATCTTTCACCTATGGATGGATGGATGGATGGATGGATGGGCAGACGGATGGACAGATACATATATACATACATGATAAATGAGTAGATGGTTGTGTAGACAGATAATAGATTAATGACTGATAAGTAATAGGTGATAATAGATGACAGAATGAAACTGATTGGTGATAGATAAGTGACAAATGATGGTGATAAATATGAGAAGATAGATGTGTTATATACATGCATACATACATGCATGCACACATGCATATATACATATATAGATGATAGATAAGTGGGTAGATTAATAGATAGATGGAAAGAGAGGTAGCAAGACCTACTTGTTTATCGATATTTATATTATTTGTAATCTAGCTTATTTAGGGACACAGGGAGAATTTCTAGTCAAATTTTCTCATTAATAACAAATGGCCACATGGATATTGGCATCCTACAATTGAATTATGGCAGCACACACTTAAGCATTCAAACAATGATCATTATCTTTAATGATGTAGAAATCCCTTAAGCATCAACATTAGTTATGCATGTACTAGAAGAGATTTTGGTCTATCAAAATTCTAATGTGTACCAAATGGGAGAGAGTAAGAGAAAGTGCATGTGTGAGTACTTGCCTGTGTGCCTGGGTGCATGTAGGGTACATGTGTGTGCACATGTGCATGTGTGCATGTGGGGTGTGTGTGCATGGGCGTATGTGCGTGTGTGCGTTACGGGTGGGAGGTTGTTTAATAGTTGGCTCCAGCATGGCTATGAGTCTGGGATTGCTTTACCAGAGTGCAGACTTCACCCTTGTTCCTTCCAG
Seq C2 exon
GAAGATCTCCAACACTTGGCTGAGCACTGGCTGGTTCACCATGACAATTGCTCTGGAGCTGTGTGACAGGATCGATGTTTACGGCATGGTGCCCCCAGACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039037:ENSMUST00000044278:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(46.7=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types