BtaINT0141690 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007309 | ST6GALNAC5
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001192804]
Coordinates
chr3:67881170-67889707:-
Coord C1 exon
chr3:67889298-67889707
Coord A exon
chr3:67881278-67889297
Coord C2 exon
chr3:67881170-67881277
Length
8020 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TAAACTATTGTTCCTTCCAGGAA
3' ss Score
8.87
Exon sequences
Seq C1 exon
CCGCTGAAAATGCACTGCAGGGACTGCGCCCTGGTGACGAGCTCCGGGCAGCTGCTGCGCAGCAGGCAAGGCGCCCAGATTGACCAGACTGAATGTGTCATTCGCATGAACGACGCCCCCACGCGTGGCTACGGGCGGGACGTGGGCAACCGCACCAGCCTGCGGGTCATCGCGCATTCCAGCATCCAGCGGATCCTCCGCAACCGCCATGACCTGCTCAACGTCAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGCCGCGACGGCAAGGGCCAGGTCTACAACAACCTGCAGCTGCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATCGCGCGCCACAAGATGCTGCAGTTCGACGAGCTCTTCAAGCGCGAGACCGGCAAAGACAG
Seq A exon
GTACGGAGGCGAGGGCAAGAGGTGGCACGGGAGACAGGCTAGGGCGAGGAAACGTTCTCCCTGGCTGGCCAATTCACCAAGAGCGAAGCTTTTTTTTTTTAATGCTTATGTCAGATAAGCTTCTTTTTCTTTAAATTTTTAATCATTTTTTTTAATTGAAGTATACTTCATTTACAATGTTGTAGTTTCAGGTGTATAGCAAAGCAATTCAGTTATATGTGTGCTAAGTCCTGTCTGACTCTTCGCAACCCCATGGACTGTAGCCCACTGACGTTCCACTGTCCATGGAATTTTCCAGGCAAGAATACTGGAGTGGGGAGCCATTTCCTACTCCAGCGGATCTTCCTGACCCAGGGATTGAACCCATGCTCTTAAGTCTCCTGCCTTGGTAGGCAGATCCTTTACCACAGAGCCACCTGAGAAGCCTAATTCAGTTTTGTGTATAAATGTGTGTGTGTATATATATATATGGAGAACATATATATGTATGTATATATATGGAGAACATATATGTTTGTGTGTATATATATATATGGAGAACAACTGTATATAATTTTATATATATTATATGTATACTTATGTGTAATATAAGATTTCTCAGATTCTTTTCTGTTAGAGGTTATTACAAGATATTTAATATAGTTCCCTGTGCTGTAGTGTAAGTCCTTGTTGTTTATATGTTTTATATATAGGAGTGGTTAATTCCAAACTCCTAATTTATCTCTTTCCCTCACTACCCCTTTTGGTAACAGTAAGTTTTTATTCTAAATCTGTGAGTCTGTCTCTGTTTTGTAAATAAGTTTATTCATAGTTTTTTTTTAAGATTCCACATGTAAGTGATACATGATATTCGTCTTTCTCTGACTTACTTTGCTTAATGTGATAAGCTCTACATCCACCCATGTTGCTGCCACTGGAAGTATTTATTCTTTCTAAAAGCTCTTGCTTAGGGCTTTCTGCTTTGGCCCTGCTGCTCATGCTGTGGACAGAGTTCATCTGTAGGGGCCTCCTGGAGATTGGACTGTTCAAGTTGAATTTATAGGCAAAGTGAAGAGAGTATTTATATGGATAATTCAGGGCCATAGCCCTACTTTGGAGGAAGAGGTGACACTGCTGCTGGCTTACATTGGTAGTAAGTGCAAGATAATAGGTTTCTTGCATTTTAGTTCCTCAGGTGAACACTAACCAAAAAGAAGTAAATAGGGTTGTTTTTCTCTTCAAAGGCAAATATTTATTCAGTCAACAGATATTTATTAGTGCCTGCTATTTCACTGCACCTGATATGGGAAATACATATAGTCAAAAGTAAGGCAGATGTAGAACCTGCCCTCCAGGAATATAGTCTTCTAGGGTGGGCAGATGTTCACCAAGTAGTGGCCAATGTGCTAGGTCTTGTGAGGGGAAGAAAATGGTCCTCTGACCTGTGGGACAGGAAGACGGGCTGTAGTCTAGGGCAAGGCTTACCAAACTGTTAGTTACAGATCTGTAATGGGACACAAAATGCATGCAGTGAGTCACTATAAGATTTTTTTTAATATAATAGAAAGAATGGAATAATGTAATAAAAGACAATTTCAGCATTCATTCCCCACAGTAAGTAAGGAAAAGTATTATTTCATGAAATAAAATTTATTTCAGTTTTGTACATAAAAATATACATATACAGAGACGTCTTTTTGATGTGATAAAATCATTCTAGAATTAGATAGGGATGATGATGGCATAACTGTGAATATACTAAAAAGCACTAAATTACGTGCTTTAGACAACTATGAAATGAAAGCCATGTATAATACATGTGAGCATATACACTCAATCACGGTGTAAAATGTATTTCTTACTGTAAGTCCAAATCTTTTGAAAAGCACTGGTCTAGAAGGTGAGGGTCTGGTGGAAAGACTTCTTAAATACATCTTCTCCCAAAGATGTATTTAAGCAGAGGCTGAGGTCAATAAGTATTTATCCAGGTAAAGAAGAACCTGAGAAGCGGAGAAAAAAGTGCCCTTATGGATATGAGAAGGTGAGAAGTGAGAAGACTTGCAGGGGGTTGGAGAAGAGTCCCTGTGACTGTGGGCAGGAGGGTGATGGTGGGCGGGGTGGGCAGCTGGAGAGGAGGCAGAGATAAAGGGTGAGGAATCGGCTAAATCTCACTGAAGAAAAGGACAGTTACAGGTATCGAAAGGAACAGCGCGGTGTACATAGTGAACAGTGCGGTGTCCAAATACACAGCTCTGGGTTGGAATTTTGACTCTGTCCCTCACTAGCTGTATAGTCTAGGACAAAATAGCTAACCTTTTAGTAACTTCACATGTGAGAAGCGCACAGTGACTAGGCTTCATAGAACTGGTCTAATGATTAAATTTTACTTATTTCCTCAATTCTAAAACATTCTTTTATAATTAATATGTGTTTAATGATATAACTTACCCCTTTCCTAAGAAAAACTGTTCCTGAGCCAATTTCTGATAAAAAAAGAATTTGTTGTTGTTCAGTCACTAAGTCATGTTCAACTGTTTGTGGACTGCAGAACACCAGGCTTCCCTGTCCTCCACTATCTCCCAGAGTTTGCTCAAGTTCATGTAAATTGAGTCAGTGATGCCATCCAACTATCTCATCCTCTGCCACCCTCTTCTCCTTTTGCTTTCAATCTTGCCCAGCATCAGAGTCTTTTCCAATGAGTCAGCTCTTCACATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTTAGCATCAGTCTTTCTAATGAATGTTGCTGTTCAGTCACTCAGTTTCGGCTGACTAATTGTGACCCCATGGACAGCAGCACGCTAGGCCTCCCTATCCTTCCAATGAATATTCAGGGTTAATTTCCTTTAGGATAGACTACTTTGATCTCCTGGCAGTCCAAGGGATTCTTAAGAGTCTTCCCTAGCACCACAATTCAAAAGCATCAATTCTTCAGAGCTCGGCCTTTTTTTATGGTCCAATTCTCAAATCCATACATGACTACTGGAAAAACCATAGCTTTGACTATATGGACCTTTGTTGGCAAAGTGATGTCTTTGCTTTTTAATACATTGTCTGGGTTTGTCATAGCTTTCCTTCTAAGAAGCAAGTGTCTTCTAATTTCATTGTTGCATTCACCACCCTCAGTGATTTTGGAGCCCAAGAAATAAAGAATAGGAAGTACTAAATCCTTTGGGCTAGCTTAAGCAACTCATTATGGAGAACAGTCTTAAAGAAAGAATAGAGCTCACTCTCCCCAAATTCTTTGTTGGGAAGAGCTTTCTCTTTAAATCCTGGAAATCTTTGTGATCGTTGGAGGGCTGGTCAGACAAGAGTAAGTATGATTTCTGATGGAGTGAGGAGAGCGGGACCCAGCTGCTGGCATGTGGCCTCCTTCCCTGGAGGTCCAGGTGACTAATTCCATGGTTAGCCCAGTCAGTAGATCACACAGGGAATCTTGTCATCATCACACACTGTCATGAAATCCAGTCATTCATTATCTTTTAAAAACCACAAATAAGACAGACTGCTGCTCATTTGTATGAGTTCTTTAACCAAAAGAGCATTTTATAAGAGAAGGAGAGTGAAGGAAGTTATTTACGGTTTCAATTTTTGTGTTTGGAAAATTCAAAATAAGTAAAAACACTCTCTTCAATAGAAAACACTTTTCTTTTGAGTTTAATGGTTGTTTGCTAGATTTAAGTATTCCTGAAACACTGCTGCAGTGTTAGCTATATCAAATAATTACACATTGTTCTGGATCGCAACAGTTAGAATTGGACATGGAACAACAGGCTGGTTCCAAATAGGAAAAGGAGTTCGTCAAGGCTGTATATTGTCACCCTACTTATTTAACTTATATGCAGAGTACATCATGAAAAACACTGGACTGGAAGAAACACAAATTGGAATCAAGATTGCCGGGAGAAATATCAGTAACCTCAGATATGCAGATGACACCACCCTTACGGCAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGTGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACGAAGATCATGGCATCCAGTCCCACCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTACAGATGGTGACTGCAGCCATGAAATTAAAAGATGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGACAACATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCAGCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCACCGAAGAATTGATGCTTTGGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGAAAGGAATGATGCTAAAGCTGAAACTCCAGTCCTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGATGACAGAGGATGAGATGGCTGGATCGTATCACTGACTCAATGGACGTGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGCCAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCGGACATGACTGAGCGACTGAATTGAACTGAACTGAACACAGTAGCATGGATTAAAGATACACTTAGTATGGAATATCTGATTTTGCACATCTCATGATCCAGACATTCATTTCAGGATAATATTTTGAAGAAATGGGATAATTCAGTAGATTCTGATTTATGGAAGTTTCACCCTACTTAAAAGTGAAGAAAAAAGTGGCTCAGAAACAATCTGCAATTAAGAAGCATGACAAATGACATAGATGGCCAAGTGGTATTCTTTGATATTAGAAAGTAACTGTACTTGAAAATAACTTTATAATTGAATAAGGGTACATTAGGAAAATATGATTCAGAACCAATATTATAGTAATTAGATAAAAGAAGCATAAATGAAATAACTGCAGGAAGAATATTTCCATAGAGATTATAAATGAGATTCTGGTGGAGCAGAAAGGCCTTTAATTGTAATTTAGTGTGCACTATAGAATTATCAGCTCAGTGTGTTACTTCATCATATAAAAGAATATCTGATCATTTCCCCTAATAAGCACATGACAGCTCTTCATATTCCTTCATTACAGCTGATTAAGTGTAAAAACAGTAGATATTCCTTTGCTGGAAAAAGAGTTTGAATCATTTTAGACAGACAGCACAGAGCAGTTGCATGTCTGTAGCATGTGAGCTTTTCCAAAAGGCTATTATTTTGCAGGTCTGGGGAATTTTAAGTGGCACTTTAAAGAAACCTTCATCTTGGTTTCTTTAGTCCTCCATTTTGTATTCTCCCCATTTTTACCCCTTAAACCTTTTACTGTAGAGTCCCATCCTCCTGTATTTCAGACTGTGGCTTGTGATTTCTACTACCTCACACAAAAGAAAGCCAAAATTGTGGGGAAGTTTCTGCCACTGGGAAAAAGCCCTCTTGGTGTTTCCTACAACTTGAAATCATAGGGACACAGGTGTGATTCCTGGATCAGGAATCTGTGGATCTCAATAAGCTATCATTCTCTTCCTGGGCCCCACATTCTCCTATTTATTCACTAACCTAGTTTAAGTCTAGAACAATTGGCCATCTCAAGGTCACAGCCTTGGTGAAGACAAGGTATGGCATGGCCTTCCCTTCCCCTCCCCCATTCAGCTCTGCTACGCACTCAGTCCCAAAGGTATTAGGAATACATAGTCCTGGTGAGAAAGAAGTGGGATCGTTAATACCTGTGTAGACTGGAGGTCCCAGAATTTTCTGATTACTTCCCTAACTACTGATGATGGATTCTACATAAGAGCCAGTAGCCATGTTAGAAGGATATCAGTTTCTTTATGTGTGTTAAAAAGCACTTAGAGTAATGGCTGAATTATTTACTTCATTTGCTCCAACCTAGCAACCCAGAGAGGAGGAAGGGACCTTGATGTATCAACATACCAGACTTTATACTTCTTATGATGTTGTCTCTCTTAGTCTTTGAAATTACAGATTGCTCAGGAAGATAGAGCTTCCCATGCCTGCTTTCTGGATAAGAAATCAAGGCTCAAAGAATAGTAGTAACCTGCCTCAGGTCATTCAGCTGGTGAATGATAGAAACTAGTAAGATACAAATCTGTGTTATATCCATCTTGAGAATCTTTTAAATGGACTTCCTGGGATATTACTGGATCAGGATACAGTGGAGTGGAAAATAAAAATGAGTAAAGAGATTAAGAACTAGAAAGTTGAAGCCATAAGCTCAGGAATGACTAAATTATCCATTCCTGTCAGGTATGTGATAAAACAAAAGACTTCTTAAAACACCTTTTTTGATTGTTATTCCTTATGTGAAATGGAAATAATGCAAACTGCTTAACAAAAACTCTTCCTCCTTAAAGAGGGGTACTATGCAGTGCCAGTAGAAAAACTTTACTGCAACTCCATTATTCATATCACAGATGGTGCTATGGCTGGGCAAAATCAGGCAGTCTGACCTTGAGGATAAGGTTTTGAAACTGGCTAATGAGGCCTACCATAAGCACTGGGGAAAAAAATAAAAACAGCAATCCCCAAAGAATTGAAATTAATATCCACAGCAGCATAGCATGGTGGACCAAGTCATCCTCACAGGTCAGCTGAGACCTTGATGGTATGTCTCCACAGCTACCCTCGGACTCAGCATGTGGTTAGAGCTCAACACAGATGTTTGAATGGGTAAATGAATTAATGTTGAAACCCACCAATGCAATCCTTATATTCTGTCAATTTTTGGTTCTTCTAATAAAAATTTTCATAGGGCTCTGACTCTTTTGATGGAAAATAAAGCAAATACTAAATTAAACATAAGTGTTCCTGTGTCCTCTTCCTCTGATCATTAGTCCCTTCCTAAATGAATGGACTTCTTTTAAGGAAAGACATTCAGTCAAGATTTAGGTGTCAGTTAGTCTAGTTAAAGGCAAGCTTCTACCTTACAACCATTTGATTGATCAATCAATCAACTGGTAGATAAAGACACGGAAAAGGCAATGGCACCCCACTCCAGTACTTTTGCCTAGAAAATCCCATGGACGTAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAGAGTCGTACATGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGAAGCCTGGTTGGCTGCCATCTATGGGGTCACACAGAGTCGGACACGACTAAAGCGACGCAGCAGCAGATAAAGACAACTGTATTTATTCATTTTAATAAGCTCTTCATTATCCACCCTGCTTGGAGAAAAAAGAATATTTATTATTCTTGACTATTATAATAGTCAAGTACTCTAGTTAAAAAAGATTTGACACATGAGGATTGTTGTCTTACAAGAAATTGAGTGGTGGGGCTTCCCAGGTGGTCCAGTGGTTAAAAACCACCTTCCAATACAGGAGTCATGGGTCCTATCCCTGGTTGTGAAATAAAGATCCCACAAGCCATGGGGCAACCAAGCCCTCGTGCCACAAGTAAGATCTAATGCAGCCAAATAAATAGATAAATAAATATTTTTTAAAAAAGAAATTGGTAATAACTTGCACATAAACATTGATCATGATCTTTGGCTATGTAGAAGTCCCTTAAGAACCCACCATAATGGAACATTGACATCATTTACCATTGTATCATGGAATATGGTGGTACTGGTAACATATTGCTATCTGGTAAAGTTCTGGCTGTTTATCAAATGGAGAGAGAGAGAGTGTGTGTGTATATAGTCATCCTTGTTCCAGATAAGATTTAAGATGGAAGGGGTGTAATGATTACTTTACCAGCTTGCAGACTAAACTATTGTTCCTTCCAG
Seq C2 exon
GAAGATCTCCAACACTTGGCTCAGCACTGGCTGGTTCACAATGACAATAGCCCTGGAACTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCCCAGACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007309:ENSBTAT00000009616:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(48.6=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]