HsaINT0159875 @ hg19
Intron Retention
Gene
ENSG00000117069 | ST6GALNAC5
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 [Source:HGNC Symbol;Acc:19342]
Coordinates
chr1:77509889-77516050:+
Coord C1 exon
chr1:77509889-77510298
Coord A exon
chr1:77510299-77515942
Coord C2 exon
chr1:77515943-77516050
Length
5644 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TTAATTATTGTTCCTTCCAGGAA
3' ss Score
9.93
Exon sequences
Seq C1 exon
CCCCTGAAAATGCACTGCAGGGACTGTGCCCTGGTGACCAGCTCAGGGCATCTGCTGCACAGTCGGCAAGGCTCCCAGATTGACCAGACAGAGTGTGTCATCCGCATGAATGACGCCCCCACACGCGGCTATGGGCGTGACGTGGGCAATCGCACCAGCCTGAGGGTCATCGCGCATTCCAGCATCCAGAGGATCCTCCGCAACCGCCATGACCTGCTCAACGTGAGCCAGGGCACCGTGTTCATCTTCTGGGGCCCCAGCAGCTACATGCGGCGGGACGGCAAGGGCCAGGTCTACAACAACCTGCATCTCCTGAGCCAGGTGCTGCCCCGGCTGAAGGCCTTCATGATTACTCGCCACAAGATGCTGCAGTTTGATGAGCTCTTCAAGCAGGAGACTGGCAAAGACAG
Seq A exon
GTACAAAGGCACAGGGAAGAAGATGCAGGGGAGGGTGAGGATAAGTCATCACTGGCTGACTCACCCAAAGCAAAGCTTTTGCTACAGGCTTTTGTTGTGGGCTCCACTGCTCATGTCATTGCTAGAGTTCACTTGTAGGGTCCTCTGCGTGACTGGGCTGCTCAAGCTGACTTTACAAGACAAAGTGAAAAGAAGCATGGAGATAATTATATGGATATTTCAGGGCCTTATTTTTGAGGAAGAGGCTACACAGCTCCTGGCCTTCATTGGTTAAAAGTGCAGTATAACAGCTTTATTGCATTTCATTTTACTTGCATAAACCCTCACCAAAAAAAAAGTATATGGGTTTATTTTTTCCCATTCAAAGGCAAACATTTATTTAGTCAACCAATATTTCTTGAGTGCCCACTACTTGCTCATCACTGTGCTTGGCCCTGGGGAAACAGTCAAACACAAGTATATAAAGCCTTGGACACTTACCAAGTAGTAGCCAGTGCACTGAGGGTCTTGAGAGGGAAGAAAATGGTGCTGTAGATGTGCCATGGGCCCTAGCCCATGGAAACCCAAACTGTTAGCTACAACTCCATATTAAGACACGAAATCAATGTAGTGAGGCACTGAAAGATTTTTTTTCTAAAGTAATGGGAAGAATGGGATAAAATGGAACAGAGTAGAATAGAAAAGACATTATCAGCATTCATCCCACATAGTAAGTTAGGTAAGGTATTGTTTCATGAAACTTTTATTTCAGTTTGATAGAGATGGAGATAGATGGATAGGGATTTCTTCTCAAAGTGATGAAAATGTTCTGAAATTAGTGGTGATGGTTGCACAATCCTGTGAATGTAAAATAAATATCACTGAATTACACACTTTAGAAAATGAAATTAAAACTGTGTCTGTGTGTCTCAATCATGATGTAAAAATGTATTTTTCACTATAGGTTGAAAGATTTGGAAATTACTGGTCTGGGAGATAAGGAAAATGCTTTCTCAAAAAGATGTACATAAGCTGAGACCCAGGGCAATAAGTCTTGGATAAAGTAAAGGACCTGGGGAGTGGGAGGGAGAAACCTCCCTGGAGGTCCAGGGAATCAGGTGTGAGAGAACATGCAGTGGGTTGGAGAAAAGCCCCCTGTGGCTGCAGTCAGGAGAACTAGGGGGTGGGGGTGACACAAGGTGAAGAAGAGAGGTGAAAAGATGTCAGCTGGACAAATCTAGGTGAAGAAAGGACAATGAAGAATCAAGGGCCACTAGAGAGTACAGCTCTGGGTTGGAACTCTGGCTCTGTCACTCTCTAGTTGTGAGGGCCTGGACAAGTTATCTAACCTTTTAGAGACTCAGTGACCTTACGTGTGAAAAGGGAATAGTGACTACTAATCGCTGGATGGACTGGTCTAATAATCAAATTGCCTCATTTCCTTAATTCTAAAACCTGTACTTTCATACGTTTGTGATGTAATTTACCCCTCTTACAAAAACTGTTACTGAGTCAATTGCTTATCTTTAAACTAAAGGAGAGTCAGACTTAGTGGTGCATGCCTATAATCCCAGCTACTTGAAAGGCTGAGGCAAGAGGATGGCTTGAGCCCAGGAGTTCAAATCCAGTGTGAGCAACATAGCAAGACCCCATCTCATAAAAATTGTTTTAAATAAAGTGATATGATAAATGCAATAAAGAATATAAAGTAATAAATCCATTCTTTGGCTAGCAGCTCATTATTAGAGAATAGTCTCAAAGAAAGACTTAAGTACAGTGCCCCCAAATTCTTTGTGTGGAAGAGCTAGATAGCTTTTAAATCCTAGAAACCTTGTGACTAGTCAAGGACTGCACCAGGCAGGAGGCATGGGTCTGGTGGAGGAAGGAGAAAGAGCTGGCTGTTGGCACTGTGGCCTTCCTCACTGGAAGGCCCAGCAGACCCCATGGGCAGCCCAGCCAGCAGATCACATTGGGGATTCTGATCATCATCTCCAGCTGCCACAAAATCCAGTCATGCATTGACCTTTGCAACTCACAGATAAGAGAGACTGTCACTCAGTTGAATGAGTTATTTAATCAAGAAAACATTTTATAAGGAATCAAGAAGGAGGGGAATTATTTAGTTTCATTTTTTACTTGTTGGAAAATTTGAAATAAGTAGAAACCATCTCAATAGAAAACACTTTTCTCTTTTTTAGTTTAATGGTTGATTGCTAAATAAGTATTCCTAAAACACTGCCGCAATGTTAGCTATTTAGTATAATTAAACATTGTTCTGGACTCCTTGAGAAATCATTTTAAGCTGATAAGTTAGATACTAAGTCATCATACCCTTTGGCCACTCAGGATCTTTAGGAACCCTTCTCACAGCAAGGCATATCCTGCTCACTAAATTCACTAAATACTGGCCAATGAGAAGCTTTTTCTCACCAGGTCTTTCTTCCTGGTCGTCCTGGCTGGTACGGAGGGAGCCAAAGCTTTGTGGAGTGGCTGGTGGGACTCTTTCCACAGACATCCATCTGCCAGGGTCCACGTAGTCCCTACTCAGGGGAATCACACTTATGAATGTGGAGGATGCCAGAGTACACTGCTGCTTCCAGAAACTTTGTGCCTCTTGCCTTCGGGAAACAGTCTTAAAGAAGCCAATACTCTATTGACTTAATATTCTTTACCTGTAGCCTGCTCCAAGCTAAAAGAAACAAGTCAGAAATGGCCATTCAGGACAAAACTATTTCTGTAAATTAAAACCTAAAACATTTAGGGTGTAATGGTATTTCTCAATGTATGCTTTTCTTCAAACCCAACAAAACAGTAGCATATGATACATAAAGTACAGAATATCTAACTTGCAGATCTCATGATCAGGACTTTCCTTTTGGGTGAATATTTTGAAGAAATAGGGTCATTTAATAGATTGTGATTGATAGAAGTTTCACCCTCCTTAAAAGTGGAGAAAAAAGTGGCTCAGGAACAATCTGCAATTAAGAAGCATGACAAATGACTTAGATGGCCAAGTGGTATTCTTTGATATTAAAAAGTAACTGTACTTGAAAATAACTTTATAATTGAATAAGGGTACATTAGGAAAATATGATTCAGAACCAATATTATAGTAATTAGATAAAGGAAGCGTAAATGAAATAACTGCAGGAAGAATATTTCCATAGAGATTATAAATGAGATTCTGGTGGAGCAGAAAGGCCCTTAATTGTAATTTAGTATGCACTATAGAATTATCAGCTCAGTGTGTTACTTCATCATATAAAAGAATATCTGATAATTTTCCCTAAAAAGCACATGACAGCTCTTCATATTCTTTCATTACAGCTGATTAAGTGTAAAAACAGTAGATATTCCTTTGTTAGAAAAAGAGTTCAACAAAGAGTTTTAGAAAGACAGCACAAAGTGTTGCATTTCTATAGCACGTGACCCCAGAAGGCTGTTATTTAGGAAGTCTGGGGAATTTTAAGTGTTACTTTAAAGAACTCTTCACTTTAGTTTCTTTCGTCCTCTACCTTGCATTCTTTTCCCCATTTTACCCACAAAGCCTTTTCCTGTGCAGCCACATCCTCCTGTATTCAGGCTGTGGTTTACAATCTCTACTACATCACATAAAACAGAACCAGAGTTATGGGAGAGTTTCTGCCCTTGGAGAAAGCCCCCTTTGGTGTGTCCAATAGCTCTAAAAGCAGAGGGAATATAAGTGTGATTCCCAGATTAGGCTCCTGAAGCTGTAAGTGAGCTGTCATCCTCTTCCTGGGTTCCACATCCTCCCAGTTATTCACTCACCCAGATTAGGTCTAGAACACATGGCCAGTGCATTGTCGCAGCCCATAGGTGAAAACAGCTTCTAACTTAAGGGAAGCCACTTCCTCTTCTTACCCTTTGCCATTCAGTCAGCTCTTCTCCATTCCAGCTCCTTCAGTCTCAAAGGTCTTATGAATATATAGCCTTAGTGAGAAAGAAGGAAAATCATTAATACCTATGTAGGCTGAAGGCTTCTGAATTTCATAATTCCTGCCCTGACTACTGATGGCAGTCCCTACACAGCCCCCAGTAGCAGAATGTTGGAAGAATTTTCTTCATGGTTGCTAAAAAGCACCAAAAAGAATGGTGAAATTATTTACCTTGATTGCTCAACCTAGAAACTAAAAGAGGAGGAAGAGATGTCAACGTACCAACATACCAAACTTGGTGCTTTTCATACATGCTTGCTTATTTAGCTCTCAAGTAGCCCAGGGGACAGAGATTCCTATGCCTCCTTTATAGATAAGAAATGAAGGGCCAAAGATCAACAATAACTTGCCTCAGGTCATCCAGCTGGTTATGATAGAAACAGGTAAGATTCAGCCCACTTATTCCCATCTTTAGGAGCTTTTAAATATGCTTTCTGGGATGTTACTAGGTCAAAATACAATGGAATAGGGGAATGAATGAGCAAAGGGCTTAAGAAATAGAAAGTTGAAGCCATGATCCCCAGGAATAACTAAGCCACCCATGCTGTCAGGTATTGGACAAAATGAAGGACTCCTTAAAAATGTCCTCTCTCTATTTTTTTTTCTTTTTTGGTCCTTATATGAAATGAAAATAATGATGCAAACTGATAGACAGAAGGTTTTCCTTCTTCTCAAGGATGGGTGCCACACAGTGCAAGTAGAAAAGCCTTCCTGCACCTCTGTTATTCACATCACAAATGATGCTATGGCTGGGCAAAGTCAGACAGTCTGACCTTGGGGATAAGGTGTTTGAAACTGGCTAATGAGGCATGCCGTAAGTACTGAAGGAAAAGTAAAAGCAGCAACCCCCGAAGAATTGAAATTAATATCCACAGTAGTGTAGCATGGTAGGCTGAGTCATTCTCACAGGATCAAATTAGACCTTGGTGTTATGTCTCCACAGTTATCCTAAGGTGTAGCATATGGTAGAAGCTCATTACAGATGTCTGAATGGGAAAATTAATGAATGGTGGGGTGCACCAGTTCATTCCTTAAATTTTGTCAATTTTTGGTCTCCTAGTAAAAATTTTCTGATATGTAAAATGAAGCAAATGTTCAGTTAAATATAAGCATTCCTGTGGCTCTTTTCCTCTGGTCATTAGCCCATACCCAAATGAGTGTACCCTTCTTACGGAAAGATATTCAATCAAGATGTTGGTGTTAGTCTACTTGAAGGCAAGCTTTCACCCTAAGTTCAGTCAATCAACCAATTGACTAATAGATAGATAAATACATGTGAATGTTTATTTATATTTAATAAGCTACTCATTATCTAGCCTGTTTGGGGAACAAGGAGAATTTCTAGTTACTCAAGTGTTCTCGTTAAGAAAGAGTTGTTAAACGGGGGCTGTCATAAGAAATTGAGTTGTGGTAACATACACTTAAACATTTAAACACTGATCATCATCTTTGATGATGCAGAAGTCCCTTGAGCATCTTTCATTGTCACAAATTCAGCATGAGCATTAACATCAATTATGATTGTACTGTGGAATATGGTAATGTTAGTAAGAGATGTCAATTTGATAAAGTTCCAGATATTTACCAAATGGAGGAGAGAGGGAGAGACTCTTGTTTATAGTTAGCCTTACTCTAGGAAAGAATTAAAGATGGTAGTGGGTATAATGGTTACTTTACCAGCTTGCAGACTTAATTATTGTTCCTTCCAG
Seq C2 exon
GAAGATATCCAACACTTGGCTCAGCACTGGCTGGTTTACAATGACAATTGCACTGGAGCTCTGTGACAGGATCAATGTTTATGGCATGGTGCCCCCAGACTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117069-ST6GALNAC5:NM_030965:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(65.4=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)